MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-2-o40-v1

Family name MIR-2 (all species)
Seed AUCACAG
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-2-o40-v2  Snu-Mir-2-o41  Snu-Mir-2-o42-v1  Snu-Mir-2-o42-v2  Snu-Mir-2-o43  Snu-Mir-2-o44 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) S. nudus
Node of Origin (family) Protostomia
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049316.1: 13593316-13593374 [+]
Precursor
(pre-Mir +30nt flank)
AAUGCUCCGCUAAGUUAUGGUGUGCCUGGGCGUCAAUGCUGGAUGUAGUAGUCAAUGAUGGAAGUUCUAUCACAGCCAGCUUUGAUGAGCCAGGACAACCUGUCAGCAUCACCGGCAUC
Get precursor sequence
Structure
        10         20        30         40        50         
AAUGCUCCGCUAAGUUAU-   GUG     G-|     U     A   A    UCAAUGA 
                   GGU   CCUGG  CGUCAA GCUGG UGU GUAG       \
                   CCA   GGACC  GUAGUU CGACC ACA UAUC       U
CUACGGCCACUACGACUGU   ACA     GA^     U     G   C    UUGAAGG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Snu-Mir-2-o40-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUCAAUGCUGGAUGUAGUAGU -22
Get sequence
Mature sequence

Snu-Mir-2-o40-v1_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCAGCUUUGAUGAG -59
Get sequence