| MirGeneDB ID | Snu-Mir-2-o42-v2 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
CACAGCC |
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| Species |
Peanut worm (Sipunculus nudus) |
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| MiRBase ID |
|
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| Paralogues |
Snu-Mir-2-o40-v1
Snu-Mir-2-o40-v2
Snu-Mir-2-o41
Snu-Mir-2-o42-v1
Snu-Mir-2-o43
Snu-Mir-2-o44
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
S. nudus
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049316.1: 13594489-13594550 [+]
|
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Precursor
(pre-Mir +30nt flank) |
UGUCAUAAGUGGGAUUUGCCAGUUGACCAGAGCAUCAUAGUGGCUGUGAUGUGCGGUGAUCAGGACAUAUCACAGCCAGCUUUGAUGAGCCUGGUCGGGAGGCAUCAUCAGCACAAGUCCAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGUCAUAAGUGGGAUUU-- AG AG- U -| UGCGGUG
GCC UUGACCAG CAUCA AG UGGCUGUGAUG A
CGG GGCUGGUC GUAGU UC ACCGACACUAU U
UACCUGAACACGACUACUA AG CGA U G^ ACAGGAC
120 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Snu-Mir-2-o42-v2_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGCAUCAUAGUGGCUGUGAUG -21
Get sequence
|
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| Mature sequence |
Snu-Mir-2-o42-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UCACAGCCAGCUUUGAUGAGCCU -62
Get sequence
|
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