MirGeneDB 3.0

MirGeneDB ID

Hru-Mir-2-o53

Family name MIR-2 (all species)
Seed AUCACAG
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-2-o51  Hru-Mir-2-o52  Hru-Mir-2-o54  Hru-Mir-2-o55  Hru-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) H. rufescens
Node of Origin (family) Protostomia
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)
JALGQA010000019.1: 17034102-17034159 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGUUUGCAGAUAAAACCAGGGGAUUUAGGCAUCAAAGUGGUUGUGGUGUGUUGAAAUAAUCAUAUCACAGCCAGCUUUGAUGAGCUUGAUUCUUUGACAUAGCCACAUUCAGCAGA
Get precursor sequence
Structure
        10          20        30          40        50       
UAUGUUUGCAGAUAAAAC--         U  G-        -|            UUGA 
                    CAGGGGAUU AG  CAUCAAAG UGGUUGUGGUGUG    A
                    GUUUCUUAG UC  GUAGUUUC ACCGACACUAUAC    A
AGACGACUUACACCGAUACA         U  GA        G^            UAAU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To To
Star sequence

Hru-Mir-2-o53_5p*

mirBase accessionNone
Sequence
0- GCAUCAAAGUGGUUGUGGUGUG -22
Get sequence
Mature sequence

Hru-Mir-2-o53_3p

mirBase accessionNone
Sequence
34- UAUCACAGCCAGCUUUGAUGAGCU -58
Get sequence