| MirGeneDB ID | Hru-Mir-2-o54 |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
AUCACAG |
|---|
| Species |
Red Abalone (Haliotis rufescens) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Hru-Mir-2-o51
Hru-Mir-2-o52
Hru-Mir-2-o53
Hru-Mir-2-o55
Hru-Mir-2-P12
|
|---|
| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
|---|
| Node of Origin (locus) |
H. rufescens
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000019.1: 17034273-17034331 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGAGUCCCAGAGGCAAAAGUGCUGUCUCUUCCAUCAAAGUGGUUGGGAUGUGGUGACUUGGUUUCAUAUCACAGCCAGCUUUGAUGACAGAGAUGCAUUCACUGAACAUCAAUGACAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGAGUCCCAGAGGCAAA---| U UC - G GUGAC
AGUGC GUCUCU CAUCAAAG UGGUUG GAUGUG U
UUACG UAGAGA GUAGUUUC ACCGAC CUAUAC U
CAACAGUAACUACAAGUCAC^ - CA G A UUUGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Hru-Mir-2-o54_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCAUCAAAGUGGUUGGGAUGUG -22
Get sequence
|
|---|
| Mature sequence |
Hru-Mir-2-o54_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAUCACAGCCAGCUUUGAUGACA -59
Get sequence
|
|---|
