| MirGeneDB ID | Hru-Mir-2-o51 |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Red Abalone (Haliotis rufescens) |
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| MiRBase ID |
|
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| Paralogues |
Hru-Mir-2-o52
Hru-Mir-2-o53
Hru-Mir-2-o54
Hru-Mir-2-o55
Hru-Mir-2-P12
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
H. rufescens
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000019.1: 17033823-17033880 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAACAAUGGACAUAUUUUGGACUUACAAGGUCAUCAAAGUGACUGUGAAAUGUGUUUCUGAUCAUAUCACAGCCAGCUUUGAUGAGCUCUGUUGGUCUGCCAGCCAUCUGAUGUCUUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAACAAUGGACAUAUUUU-- U - G GA-| AA UUU
GGACU ACA AG UCAUCAAAGU CUGUGA UGUG C
UCUGG UGU UC AGUAGUUUCG GACACU AUAC U
GUUCUGUAGUCUACCGACCG U C G ACC^ -- UAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Hru-Mir-2-o51_5p* |
| mirBase accession | None |
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| Sequence |
0- UCAUCAAAGUGACUGUGAAAUGUGU -25
Get sequence
|
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| Mature sequence |
Hru-Mir-2-o51_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UAUCACAGCCAGCUUUGAUGAGCU -58
Get sequence
|
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