| MirGeneDB ID | Hru-Mir-2-o55 |
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| Family name |
MIR-2 (all species) |
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| Seed |
CACAGCC |
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| Species |
Red Abalone (Haliotis rufescens) |
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| MiRBase ID |
|
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| Paralogues |
Hru-Mir-2-o51
Hru-Mir-2-o52
Hru-Mir-2-o53
Hru-Mir-2-o54
Hru-Mir-2-P12
|
|---|
| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
H. rufescens
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000019.1: 17033087-17033148 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUGAGUGUUGUGAGACUACAGAUGUCAUGCAACGUCAACGCUGGAUGUUAUACUGUGGCUCCAGUCUCUAUCACAGCCAGCCUUGAUGAGCCAUGACACCUGUCAUGACGAGGUCAGCACAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGAGUGUUGUGAGACU--| A CAA C A U CUGUGGC
ACAG UGUCAUG CGUCAA GCUGG UGU AUA U
UGUC ACAGUAC GUAGUU CGACC ACA UAU C
AACACGACUGGAGCAGUAC^ C CGA C G C CUCUGAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Hru-Mir-2-o55_5p* |
| mirBase accession | None |
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| Sequence |
0- AACGUCAACGCUGGAUGUUAUA -22
Get sequence
|
|---|
| Mature sequence |
Hru-Mir-2-o55_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UCACAGCCAGCCUUGAUGAGCC -62
Get sequence
|
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