MirGeneDB 3.0

MirGeneDB ID

Eba-Mir-2-o91

Family name MIR-2 (all species)
Seed AUCACAG
Species Epimenia (Solenogaster) (Epimenia babai)
MiRBase ID
Paralogues Eba-Mir-2-o90  Eba-Mir-2-o92 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) E. babai
Node of Origin (family) Protostomia
Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia)
WURV02085510.1: 2691-2749 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGAUGACCAGAAAAAUUGGGCGGUUGGUCCGUCAAAGUUGCUGGGAUAUGAUAUCUUACGACCAUAUCACAGCCAGCUUUGAUGAGCCGACUUCUUCCGCAGGCAACAUCAACUCCA
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Structure
        10        20          30        40         50        
CAUGAUGACCAGAAAAAUU   C--      UC          -|   G      AUAUC 
                   GGG   GGUUGG  CGUCAAAGUU GCUG GAUAUG     U
                   CCU   UCAGCC  GUAGUUUCGA CGAC CUAUAC     U
ACCUCAACUACAACGGACG   UCU      GA          C^   A      CAGCA 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Eba-Mir-2-o91_5p* (predicted)

mirBase accessionNone
Sequence
0- CCGUCAAAGUUGCUGGGAUAUG -22
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Mature sequence

Eba-Mir-2-o91_3p

mirBase accessionNone
Sequence
36- UAUCACAGCCAGCUUUGAUGAGC -59
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