| MirGeneDB ID | Eba-Mir-2-o90 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Epimenia (Solenogaster) (Epimenia babai) |
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| MiRBase ID |
|
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| Paralogues |
Eba-Mir-2-o91
Eba-Mir-2-o92
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
E. babai
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia) |
WURV02085510.1: 1105-1165 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AUUUAUGAUGACUCGAGCAUUCCUGGUGGAUCGUCAAAGUUUCUGUGAAAUGUGUCAUAUAUUCAUCAUAUCACAGUCAGCUUUGACGAGCCUCCGUGGGUGUCCAAUCAGCCGCCUCACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUUAUGAUGACUCGAG-- C U A U-| A UGUCAU
CAUUC UGG GG UCGUCAAAGUU CUGUGA AUG A
GUGGG GCC CC AGCAGUUUCGA GACACU UAC U
ACACUCCGCCGACUAACCU U U G CU^ A UACUUA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Eba-Mir-2-o90_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UCGUCAAAGUUUCUGUGAAAUG -22
Get sequence
|
|---|
| Mature sequence |
Eba-Mir-2-o90_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- UAUCACAGUCAGCUUUGACGAGC -61
Get sequence
|
|---|
