MirGeneDB 3.0

MirGeneDB ID

Eba-Mir-2-o92

Family name MIR-2 (all species)
Seed AUCACAG
Species Epimenia (Solenogaster) (Epimenia babai)
MiRBase ID
Paralogues Eba-Mir-2-o90  Eba-Mir-2-o91 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) E. babai
Node of Origin (family) Protostomia
Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia)
WURV02085510.1: 3976-4035 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCGACGUACAACCGUACUAGCUGCCACGGGCGUCAGAGUGGUUUUGAUGUGUUGUUCGAGAUAGUCAUAUCACAGCCAGCUUUGAUGAUCCGUGGUUUGUCUUGAAACUGCUUCAGAUGC
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Structure
        10         20         30          40        50        
GCGACGUACAACCGUACUA-  U-        -        -|    U       UUGUUC 
                    GC  GCCACGGG CGUCAGAG UGGUU UGAUGUG      G
                    UG  UGGUGCCU GUAGUUUC ACCGA ACUAUAC      A
CGUAGACUUCGUCAAAGUUC  UU        A        G^    C       UGAUAG 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Eba-Mir-2-o92_5p* (predicted)

mirBase accessionNone
Sequence
0- CGUCAGAGUGGUUUUGAUGUG -21
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Mature sequence

Eba-Mir-2-o92_3p

mirBase accessionNone
Sequence
37- UAUCACAGCCAGCUUUGAUGAUC -60
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