| MirGeneDB ID | War-Mir-2-o93 |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
CACAGCC |
|---|
| Species |
Wirenia (Solenogaster) (Wirenia argentea) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
War-Mir-2-P12
War-Mir-2-o94
War-Mir-2-o95
War-Mir-2-o96
War-Mir-2-o97
War-Mir-2-o98
War-Mir-2-o99
|
|---|
| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
|---|
| Node of Origin (locus) |
W. argentea
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_025802215.1_ASM2580221v1_Wirenia) |
WNLI01003363.1: 15447-15507 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCGAUUGACCAAGAAAAGCACACGUCAAAGCCCGUCAAAAUCGGUCUGUCAUAGUAACAUCUCGGCCUAUCACAGCCAGUUUUGAUGAGCCAGGAUGUGUUGCGCAUCAACAGAAAUCUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCGAUUGACCAAGAAAA- -| AAA C C U C GUAACA
GC ACACGUC GC CGUCAAAAU GG CUGU AUA U
CG UGUGUAG CG GUAGUUUUG CC GACA UAU C
CAUCUAAAGACAACUACG U^ GAC A A - C CCGGCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
War-Mir-2-o93_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CCCGUCAAAAUCGGUCUGUCAUA -23
Get sequence
|
|---|
| Mature sequence |
War-Mir-2-o93_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UCACAGCCAGUUUUGAUGAGCC -61
Get sequence
|
|---|
