| MirGeneDB ID | War-Mir-2-o99 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Wirenia (Solenogaster) (Wirenia argentea) |
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| MiRBase ID |
|
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| Paralogues |
War-Mir-2-P12
War-Mir-2-o93
War-Mir-2-o94
War-Mir-2-o95
War-Mir-2-o96
War-Mir-2-o97
War-Mir-2-o98
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
W. argentea
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_025802215.1_ASM2580221v1_Wirenia) |
WNLI01082317.1: 2162-2221 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UGUCAGCGAUGCCAAUUUUGGUCUUUAUUCCCAUUCAAGUGACUGUGAUGUGUUCCUAUAGCAACCAUAUCACAGUCUGCUUUGAUGAGCAUAUGACUAAUAACACAUCACGUUUGACAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGUCAGCGAUGCCAAUU---| UU UCC C - UUCCUA
UUGGUC UAU CAUU AAGU GACUGUGAUGUG \
AAUCAG AUA GUAG UUCG CUGACACUAUAC U
AACAGUUUGCACUACACAAU^ U- CGA U U CAACGA
. 110 100 90 80 70 60 |
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| Deep sequencing |
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
War-Mir-2-o99_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCAUUCAAGUGACUGUGAUGUGU -23
Get sequence
|
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| Mature sequence |
War-Mir-2-o99_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- UAUCACAGUCUGCUUUGAUGAGC -60
Get sequence
|
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