MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-2-o139b-v1

Family name MIR-2 (all species)
Seed AUCACAG
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-2-o139a  Ava-Mir-2-o139b-v2  Ava-Mir-2-o140a  Ava-Mir-2-o140b  Ava-Mir-2-o141a  Ava-Mir-2-o141b 
Orthologues Gsp-Mir-2  Pca-Mir-2-o139  Ple-Mir-2 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075494.1: 5318243-5318303 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAUGAAAUCUGUUGUGAAUUGAAACUAUUCCGCCUACUGGUUGUGAUUAUGUACAAAUGAAAUCAUAUCACAGCCAGCUUUGGUGGAAUGGAAAUCACAUGAAUCGACUACGACGAUAU
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Structure
        10        20          30          40        50         
GAAAUGAAAUCUGUUGUGAAU-   AA-          UA--|          U   UACAA 
                      UGA   CUAUUCCGCC    CUGGUUGUGAU AUG     A
                      ACU   GGUAAGGUGG    GACCGACACUA UAC     U
UAUAGCAGCAUCAGCUAAGUAC   AAA          UUUC^          -   UAAAG 
 .       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sr Sr
Star sequence

Ava-Mir-2-o139b-v1_5p*
mirBase accessionNone
Sequence 
0- UCCGCCUACUGGUUGUGAUUAUG -23
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Mature sequence

Ava-Mir-2-o139b-v1_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCAGCUUUGGUGGAAU -61
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