MirGeneDB ID | Ava-Mir-2-o140a |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-2-o139a
Ava-Mir-2-o139b-v1
Ava-Mir-2-o139b-v2
Ava-Mir-2-o140b
Ava-Mir-2-o141a
Ava-Mir-2-o141b
|
Orthologues |
Gsp-Mir-2
Pca-Mir-2-o140
Ple-Mir-2
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075496.1: 4518750-4518810 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUCAUUUUAUUUAAUCAUCUCAAUUUGUGUCAGCAAAGAGAUCGUGCUAUGUGAAAAUCGAAAUCAUAUCACAGUCUUGCUUUGUUGACAUGAAACCAACAUACAUCAAAUAUGAUCAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUCAUUUUAUUUAAUCAUCUCAA-- UG --| C C UGAAAA
UU UGUCAGCAAAG AGAU GUG UAUG \
AA ACAGUUGUUUC UCUG CAC AUAC U
GAACUAGUAUAAACUACAUACAACCA GU GU^ A U UAAAGC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Ava-Mir-2-o140a_5p* |
mirBase accession | None |
Sequence |
0- UCAGCAAAGAGAUCGUGCUAUG -22
Get sequence
|
Mature sequence |
Ava-Mir-2-o140a_3p |
mirBase accession | None |
Sequence |
37- UAUCACAGUCUUGCUUUGUUGACA -61
Get sequence
|