MirGeneDB ID | Ava-Mir-2-o139b-v2 |
Family name |
MIR-2 (all species) |
Seed |
CGCCUAC |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-2-o139a
Ava-Mir-2-o139b-v1
Ava-Mir-2-o140a
Ava-Mir-2-o140b
Ava-Mir-2-o141a
Ava-Mir-2-o141b
|
Orthologues |
Gsp-Mir-2
Pca-Mir-2-o139
Ple-Mir-2
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075494.1: 5318244-5318302 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAUGAAAUCUGUUGUGAAUUGAAACUAUUCCGCCUACUGGUUGUGAUUAUGUACAAAUGAAAUCAUAUCACAGCCAGCUUUGGUGGAAUGGAAAUCACAUGAAUCGACUACGACGAUA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAUGAAAUCUGUUGUGAAU- AA- UA--| U UACAA
UGA CUAUUCCGCC CUGGUUGUGAU AUG A
ACU GGUAAGGUGG GACCGACACUA UAC U
AUAGCAGCAUCAGCUAAGUAC AAA UUUC^ - UAAAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ava-Mir-2-o139b-v2_5p |
mirBase accession | None |
Sequence |
0- CCGCCUACUGGUUGUGAUUAUG -22
Get sequence
|
Star sequence |
Ava-Mir-2-o139b-v2_3p* |
mirBase accession | None |
Sequence |
36- UAUCACAGCCAGCUUUGGUGGAA -59
Get sequence
|