| MirGeneDB ID | Ava-Mir-2-o140b |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
AUCACAG |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
|---|
| Paralogues |
Ava-Mir-2-o139a
Ava-Mir-2-o139b-v1
Ava-Mir-2-o139b-v2
Ava-Mir-2-o140a
Ava-Mir-2-o141a
Ava-Mir-2-o141b
|
|---|
| Orthologues |
Gsp-Mir-2
Pca-Mir-2-o140
Ple-Mir-2
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075493.1: 8116038-8116099 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUUUUUUUCUUUACAUUAUCUUUAUUUGUGUCAGCAAAGAGAUCGUGCUAUGUGUAAACCGAAGUUCAUAUCACAGUCUUGCUUUGUUGACAUGAAACGAACAUUCAUCGUAUGCAAUAUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUUUUUUCUUUACAUUAUCUUUA-- UG --| C C UGUAAA
UU UGUCAGCAAAG AGAU GUG UAUG C
AA ACAGUUGUUUC UCUG CAC AUAC C
CAUAUAACGUAUGCUACUUACAAGCA GU GU^ A U UUGAAG
120 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-2-o140b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCAGCAAAGAGAUCGUGCUAUG -22
Get sequence
|
|---|
| Mature sequence |
Ava-Mir-2-o140b_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UAUCACAGUCUUGCUUUGUUGACA -62
Get sequence
|
|---|
