MirGeneDB ID | Ava-Mir-2-o140b |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-2-o139a
Ava-Mir-2-o139b-v1
Ava-Mir-2-o139b-v2
Ava-Mir-2-o140a
Ava-Mir-2-o141a
Ava-Mir-2-o141b
|
Orthologues |
Gsp-Mir-2
Pca-Mir-2-o140
Ple-Mir-2
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075493.1: 8116038-8116099 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUUUUCUUUACAUUAUCUUUAUUUGUGUCAGCAAAGAGAUCGUGCUAUGUGUAAACCGAAGUUCAUAUCACAGUCUUGCUUUGUUGACAUGAAACGAACAUUCAUCGUAUGCAAUAUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUUUUUUCUUUACAUUAUCUUUA-- UG --| C C UGUAAA
UU UGUCAGCAAAG AGAU GUG UAUG C
AA ACAGUUGUUUC UCUG CAC AUAC C
CAUAUAACGUAUGCUACUUACAAGCA GU GU^ A U UUGAAG
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Ava-Mir-2-o140b_5p* |
mirBase accession | None |
Sequence |
0- UCAGCAAAGAGAUCGUGCUAUG -22
Get sequence
|
Mature sequence |
Ava-Mir-2-o140b_3p |
mirBase accession | None |
Sequence |
38- UAUCACAGUCUUGCUUUGUUGACA -62
Get sequence
|