| MirGeneDB ID | Ava-Mir-2-o139a |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-2-o139b-v1
Ava-Mir-2-o139b-v2
Ava-Mir-2-o140a
Ava-Mir-2-o140b
Ava-Mir-2-o141a
Ava-Mir-2-o141b
|
|---|
| Orthologues |
Gsp-Mir-2
Pca-Mir-2-o139
Ple-Mir-2
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 15778415-15778482 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUUUCUUUUCAUUUUGUCAAUAAGAUUUAUUCCUCAAAAAUGAUUGUGUUUAUGUUGAAUUAUUGAAAAUAUCAUAUCACAGUCAGCUUUGAUGGAAUAAAUUAGACAUUUUAACGACGAAAACAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUUCUUUUCAUUUUGUCAAUAA-- -| AA UU UUGAAUUA
GAUUUAUUCC UCAAA UGAUUGUG UAUG U
UUAAAUAAGG AGUUU ACUGACAC AUAC U
CUAACAAAAGCAGCAAUUUUACAGA U^ CG U- UAUAAAAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-2-o139a_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUCAAAAAUGAUUGUGUUUAUG -24
Get sequence
|
|---|
| Mature sequence |
Ava-Mir-2-o139a_3p |
| mirBase accession | None |
|---|
| Sequence |
44- UAUCACAGUCAGCUUUGAUGGAAU -68
Get sequence
|
|---|
