MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-2-o139a

Family name MIR-2 (all species)
Seed AUCACAG
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-2-o139b-v1  Ava-Mir-2-o139b-v2  Ava-Mir-2-o140a  Ava-Mir-2-o140b  Ava-Mir-2-o141a  Ava-Mir-2-o141b 
Orthologues Gsp-Mir-2  Pca-Mir-2-o139  Ple-Mir-2 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075495.1: 15778415-15778482 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUCUUUUCAUUUUGUCAAUAAGAUUUAUUCCUCAAAAAUGAUUGUGUUUAUGUUGAAUUAUUGAAAAUAUCAUAUCACAGUCAGCUUUGAUGGAAUAAAUUAGACAUUUUAACGACGAAAACAAUC
Get precursor sequence
Structure
        10        20          30         40        50        60   
UUUUCUUUUCAUUUUGUCAAUAA--          -|    AA        UU    UUGAAUUA 
                         GAUUUAUUCC UCAAA  UGAUUGUG  UAUG        U
                         UUAAAUAAGG AGUUU  ACUGACAC  AUAC        U
CUAACAAAAGCAGCAAUUUUACAGA          U^    CG        U-    UAUAAAAG 
      120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To To
Star sequence

Ava-Mir-2-o139a_5p*
mirBase accessionNone
Sequence 
0- UCCUCAAAAAUGAUUGUGUUUAUG -24
Get sequence
Mature sequence

Ava-Mir-2-o139a_3p
mirBase accessionNone
Sequence 
44- UAUCACAGUCAGCUUUGAUGGAAU -68
Get sequence