MirGeneDB ID | Pve-Mir-2-o79 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Vernerds tusk shell (Pictodentalium vernedei) |
MiRBase ID |
|
Paralogues |
Pve-Mir-2-o74-v1
Pve-Mir-2-o74-v2
Pve-Mir-2-o75-v1
Pve-Mir-2-o75-v2
Pve-Mir-2-P12
Pve-Mir-2-o76-v1
Pve-Mir-2-o76-v2
Pve-Mir-2-o77
Pve-Mir-2-o78-v1
Pve-Mir-2-o78-v2
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
Dentaliidae
|
Node of Origin (family) |
Protostomia
|
Genome context (PVE_manual_microRNAloci) |
CM062295.1:484544123-484544380: 101-158 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGGUGCGAAGAAGAUCUGGAAAAAUCCUUCCAUUAAAGUGGUUGUGAUCUGUUGAAUUUUAUCAUAUCACAGCCAGCUUUGAUGAAGGGACAUGGCCUUUUGCAGCAAAGUUUCAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGGUGCGAAGAAGAUCU-- AAAAA C -| C UUGAA
GG UCCUU CAUUAAAG UGGUUGUGAU UG \
CC AGGGA GUAGUUUC ACCGACACUA AC U
CAACUUUGAAACGACGUUUU GGUAC A G^ U UAUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pve-Mir-2-o79_5p* |
mirBase accession | None |
Sequence |
0- CCAUUAAAGUGGUUGUGAUCUG -22
Get sequence
|
Mature sequence |
Pve-Mir-2-o79_3p |
mirBase accession | None |
Sequence |
35- UAUCACAGCCAGCUUUGAUGAAG -58
Get sequence
|