| MirGeneDB ID | Pve-Mir-2-o78-v2 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
CACAGCC |
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| Species |
Vernerds tusk shell (Pictodentalium vernedei) |
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| MiRBase ID |
|
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| Paralogues |
Pve-Mir-2-o74-v1
Pve-Mir-2-o74-v2
Pve-Mir-2-o75-v1
Pve-Mir-2-o75-v2
Pve-Mir-2-P12
Pve-Mir-2-o76-v1
Pve-Mir-2-o76-v2
Pve-Mir-2-o77
Pve-Mir-2-o78-v1
Pve-Mir-2-o79
|
|---|
| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
Dentaliidae
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(PVE_manual_microRNAloci) |
CM062295.1:484544506-484544763: 101-158 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUUACUGCAGUGAUUGAAGCUGUAUCGGGAUCAUCAAAGUGGCUCUGAUGUGAAUAAAACUUGCAUAUCACAGCCAGCUUUGAUGAGCUUUGAUUCAGUAUAUGACAACCAAAUGUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUUACUGCAGUGAUUGAA- U A- -| C UGAAUAA
GCUG AUCGGG UCAUCAAAG UGGCU UGAUG \
UGAC UAGUUU AGUAGUUUC ACCGA ACUAU A
UUUGUAAACCAACAGUAUA U CG G^ C ACGUUCA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pve-Mir-2-o78-v2_5p* |
| mirBase accession | None |
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| Sequence |
0- UCAUCAAAGUGGCUCUGAUG -20
Get sequence
|
|---|
| Mature sequence |
Pve-Mir-2-o78-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UCACAGCCAGCUUUGAUGAGC -58
Get sequence
|
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