MirGeneDB 3.0

MirGeneDB ID

Pve-Mir-2-o76-v1

Family name MIR-2 (all species)
Seed AUCACAG
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues Pve-Mir-2-o74-v1  Pve-Mir-2-o74-v2  Pve-Mir-2-o75-v1  Pve-Mir-2-o75-v2  Pve-Mir-2-P12  Pve-Mir-2-o76-v2  Pve-Mir-2-o77  Pve-Mir-2-o78-v1  Pve-Mir-2-o78-v2  Pve-Mir-2-o79 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Dentaliidae
Node of Origin (family) Protostomia
Genome context
(PVE_manual_microRNAloci)
CM062295.1:484550445-484550703: 101-159 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCACUUGAAGAAAAAAAGUUUGCUUGUAGUCGUCAAAGUGGCAGUGAAAUGUGGAGAUAAGUUCAUAUCACAGCCAGCUUUGAUGAGCUUUUGGCUAACAAAAUGCACCAAGACAGCA
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Structure
        10         20        30          40        50        
ACCACUUGAAGAAAAAAA-   U   UGU  -         -|   A    A   UGGAG 
                   GUU GCU   AG UCGUCAAAG UGGC GUGA AUG     A
                   CAA CGG   UC AGUAGUUUC ACCG CACU UAC     U
ACGACAGAACCACGUAAAA   U   UUU  G         G^   A    A   UUGAA 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pve-Mir-2-o76-v1_5p*

mirBase accessionNone
Sequence
0- UCGUCAAAGUGGCAGUGAAAUG -22
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Mature sequence

Pve-Mir-2-o76-v1_3p

mirBase accessionNone
Sequence
36- UAUCACAGCCAGCUUUGAUGAGC -59
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