MirGeneDB ID | Pca-Mir-2-o143 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Penis worm (Priapulus caudatus) |
MiRBase ID |
|
Paralogues |
Pca-Mir-2-o139
Pca-Mir-2-o140
Pca-Mir-2-o141
Pca-Mir-2-o142
Pca-Mir-2-o144
Pca-Mir-2-o145
Pca-Mir-2-o146
Pca-Mir-2-o147
Pca-Mir-2-o148
Pca-Mir-2-o149
Pca-Mir-2-o150
Pca-Mir-2-o151
Pca-Mir-2-o152
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
Tur-Mir-2-o143
|
Node of Origin (locus) |
P. caudatus
|
Node of Origin (family) |
Protostomia
|
Genome context (Priapulus_caudatus_gca000485595v2) |
KQ715271.1: 34696-34756 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUGGACGAUGUUUUAACGGAACGGUCUGUAUCGCUAGAGUUGCUGUGAUUUGUUGAUUUCACAUUCAUAUCACAGGCUCUUUGGUGAUGCAGAGCGAUUCUAAUGCUCUUCGUGUGAUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUGGACGAUGUUUUAAC- -| G UUG U UUGAUU
GGAA CG UCUGUAUCGCUAGAG CUGUGAU UG \
UCUU GC AGACGUAGUGGUUUC GACACUA AC U
GCUAGUGUGCUUCUCGUAA A^ G UCG U UUACAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pca-Mir-2-o143_5p* |
mirBase accession | None |
Sequence |
0- AUCGCUAGAGUUGCUGUGAUUUG -23
Get sequence
|
Mature sequence |
Pca-Mir-2-o143_3p |
mirBase accession | None |
Sequence |
38- UAUCACAGGCUCUUUGGUGAUGC -61
Get sequence
|