| MirGeneDB ID | Tur-Mir-2-o143 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Two-spotted spider mite (Tetranychus urticae) |
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| MiRBase ID |
|
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| Paralogues |
Tur-Mir-2-o142a
Tur-Mir-2-o142b
|
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| Orthologues |
Gsp-Mir-2
Pca-Mir-2-o143
Ple-Mir-2
|
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| Node of Origin (locus) |
T. urticae
|
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587302.1: 3261040-3261110 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAAACUGGUGUAAUUUGCAUUCAUCUGGGUCGUCAAAGAGGCUGUGAAAUGUAAAUAUUGUUUUGCUUAAUAACUCAUAUCACAGCCAGCUUUGAUGAUUUUGGUAAAAUGCAGUGCUCAUCAUCACCGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAAAACUGGUGUAAUUU- C- UG A-| A UAAAUAUUGUU
GCAUU AUC GGUCGUCAAAG GGCUGUGA AUG U
CGUAA UGG UUAGUAGUUUC CCGACACU UAC U
UGCCACUACUACUCGUGA AA UU GA^ A UCAAUAAUUCG
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Tur-Mir-2-o143_5p* |
| mirBase accession | None |
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| Sequence |
0- UCGUCAAAGAGGCUGUGAAAUG -22
Get sequence
|
|---|
| Mature sequence |
Tur-Mir-2-o143_3p |
| mirBase accession | None |
|---|
| Sequence |
48- UAUCACAGCCAGCUUUGAUGAUU -71
Get sequence
|
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