| MirGeneDB ID | Pcr-Mir-2-o160 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
UUCCAAU |
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| Species |
Tiger flatworm (Prostheceraeus crozieri ) |
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| MiRBase ID |
|
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| Paralogues |
Pcr-Mir-2-o159
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
P. crozeri
|
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic) |
CAJQUW010002633.1: 636207-636265 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCUUUUUAGAUUAUACGUGUUUUUCCUUUAUUCCAAUUAGGCUGUGUUGCUUUGAAGUUAACUAGUAUCACAGCCCUGCUUGGAAUAAUGAGAUGUCACUGUGCUGCCGGAAGAUUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCCUUUUUAGAUUAUAC-- UU-| CU U - U UUGAA
GUG UUUC UUAUUCCAA UAGG CUGUG UGCU G
CAC AGAG AAUAAGGUU GUCC GACAC AUGA U
UCUUAGAAGGCCGUCGUGU UGU^ U- C C U UCAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pcr-Mir-2-o160_5p |
| mirBase accession | None |
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| Sequence |
0- AUUCCAAUUAGGCUGUGUUGCU -22
Get sequence
|
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| Co-mature sequence |
Pcr-Mir-2-o160_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAUCACAGCCCUGCUUGGAAUAA -59
Get sequence
|
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