MirGeneDB 3.0

MirGeneDB ID

Egr-Mir-2-o138

Family name MIR-2 (all species)
Seed AUCACAG
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-2a
Paralogues Egr-Mir-2-o136  Egr-Mir-2-o137 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) E. granulosus
Node of Origin (family) Protostomia
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000019.1: 574332-574389 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACUUCGUGAGCACGCUUCGAACCUCCCUACGUUCCAGGGGGAUGUGAGUUUAUACAGCCUAUGAAUCACAGCCCUGCUUGGAACCAAAGGAGCUUCCUAAACGCCUUUGGCUUAUUU
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Structure
        10          20        30          40        50        
AACUUCGUGAGCACGCUUC--   C    CUAC        --|  A     G    UACA 
                     GAA CUCC    GUUCCAGG  GGG UGUGA UUUA    \
                     CUU GAGG    CAAGGUUC  CCC ACACU AAGU    G
UUUAUUCGGUUUCCGCAAAUC   C    AAAC        GU^  G     -    AUCC 
      110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Star sequence

Egr-Mir-2-o138_5p*

mirBase accessionMIMAT0037419
Sequence
0- CGUUCCAGGGGGAUGUGAGUUUA -23
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Mature sequence

Egr-Mir-2-o138_3p

mirBase accessionMIMAT0020229
Sequence
34- AAUCACAGCCCUGCUUGGAACCAA -58
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