MirGeneDB ID | Egr-Mir-2-o138 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Hydatid worm (Echinococcus granulosus) |
MiRBase ID |
egr-mir-2a
|
Paralogues |
Egr-Mir-2-o136
Egr-Mir-2-o137
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
E. granulosus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000019.1: 574332-574389 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACUUCGUGAGCACGCUUCGAACCUCCCUACGUUCCAGGGGGAUGUGAGUUUAUACAGCCUAUGAAUCACAGCCCUGCUUGGAACCAAAGGAGCUUCCUAAACGCCUUUGGCUUAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AACUUCGUGAGCACGCUUC-- C CUAC --| A G UACA
GAA CUCC GUUCCAGG GGG UGUGA UUUA \
CUU GAGG CAAGGUUC CCC ACACU AAGU G
UUUAUUCGGUUUCCGCAAAUC C AAAC GU^ G - AUCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Egr-Mir-2-o138_5p* |
mirBase accession | MIMAT0037419 |
Sequence |
0- CGUUCCAGGGGGAUGUGAGUUUA -23
Get sequence
|
Mature sequence |
Egr-Mir-2-o138_3p |
mirBase accession | MIMAT0020229 |
Sequence |
34- AAUCACAGCCCUGCUUGGAACCAA -58
Get sequence
|