MirGeneDB 3.0

MirGeneDB ID

Dgr-Mir-2-o39

Family name MIR-2 (all species)
Seed AUCACAG
Species Dimorphilus gyrociliatus (Dimorphilus gyrociliatus)
MiRBase ID
Paralogues Dgr-Mir-2-o36  Dgr-Mir-2-o37  Dgr-Mir-2-o38  Dgr-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) D. gyrociliatus
Node of Origin (family) Protostomia
Genome context
(GCA_904063045.1_Dgyrociliatus)
CAJFCJ010000007.1: 2553392-2553451 [+]
Precursor
(pre-Mir +30nt flank)
AACAGCUACCUUAUUCUUUGCAAGUAGGGCGAAUCAAAGUAGUUGUGGUGUGCUGUCUUUCGGUUCAUAUCACAGCUUGCUUUGAUGAGCUUAGCUUUGCUCUUUGAUCACUGUCGAAUU
Get precursor sequence
Structure
        10         20         30        40         50         
AACAGCUACCUUAUUCUUU-  -    AG   GA        -|           CUGUCU 
                    GC AAGU  GGC  AUCAAAGU AGUUGUGGUGUG      \
                    CG UUCG  UCG  UAGUUUCG UCGACACUAUAC      U
UUAAGCUGUCACUAGUUUCU  U    AU   AG        U^           UUGGCU 
.       110       100        90        80        70        60
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU Unknown
MotifsNo
Star sequence

Dgr-Mir-2-o39_5p* (predicted)

mirBase accessionNone
Sequence
0- GAAUCAAAGUAGUUGUGGUGUG -22
Get sequence
Mature sequence

Dgr-Mir-2-o39_3p (predicted)

mirBase accessionNone
Sequence
37- UAUCACAGCUUGCUUUGAUGAGC -60
Get sequence