| MirGeneDB ID | Dgr-Mir-2-o38 |
|---|---|
| Family name | MIR-2 (all species) |
| Seed | AUCACAG |
| Species | Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) |
| MiRBase ID | |
| Paralogues | Dgr-Mir-2-o36 Dgr-Mir-2-o37 Dgr-Mir-2-o39 Dgr-Mir-2-P12 |
| Orthologues | Gsp-Mir-2 Ple-Mir-2 |
| Node of Origin (locus) | D. gyrociliatus |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_904063045.1_Dgyrociliatus) |
CAJFCJ010000007.1: 2553257-2553315 [+] |
| Precursor (pre-Mir +30nt flank) | CUUACGUCUUUUGCACAAGUAGUUCGUGGCUUGUCGAGUGGCAGUGAUGUGUCGAUUUCAUGAUCAUAUCACAGCCAGCUUUGAUGAGCUAUGCGCGCUUUUCAAUCCUCGCUAAUGCUGet precursor sequence |
| Structure | 10 20 30 40 50 CUUACGUCUUUUGCACA--- A U UG --| A UCGAUU AGU GU CGUGGCU UCGAG UGGC GUGAUGUG \ UCG CG GUAUCGA AGUUU ACCG CACUAUAC U UCGUAAUCGCUCCUAACUUU - C GU CG^ A UAGUAC 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Dgr-Mir-2-o38_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UUGUCGAGUGGCAGUGAUGUG -21
Get sequence
|
| Mature sequence | Dgr-Mir-2-o38_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- UAUCACAGCCAGCUUUGAUGAGC -59
Get sequence
|
