| MirGeneDB ID | Rph-Mir-12589 |
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| Family name |
MIR-12589 (all species) |
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| Seed |
UUGUAGA |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mgi-Mir-12589
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| Node of Origin (locus) |
Autobranchia
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| Node of Origin (family) |
Autobranchia
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Genome context
(Ruditapes_GCA_009026015) |
CM018528.1: 19123189-19123246 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGUCCACGAAAAAGAAUGAGUAAAUCCCGUAUUGUGUCCGUUUCUGCAAUUGUAGAGAAAACGGAAUUGUAGAAAACGACACAAUAUAGGUUUUUACUUCCAUCAACAGAACGACGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CGUCCACGAAAAAGAAU-- UC -| CG GUAGAG
GAGUAAA CC GUAUUGUGUC UUUCUGCAAUU \
UUCAUUU GG UAUAACACAG AAAGAUGUUAA A
UAGCAGCAAGACAACUACC UU A^ CA GGCAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Star sequence |
Rph-Mir-12589_5p* |
| mirBase accession | None |
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| Sequence |
0- AUUGUGUCCGUUUCUGCAAUUG -22
Get sequence
|
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| Mature sequence |
Rph-Mir-12589_3p |
| mirBase accession | None |
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| Sequence |
35- AUUGUAGAAAACGACACAAUAUA -58
Get sequence
|
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