MirGeneDB 3.0

MirGeneDB ID

Rph-Novel-3

Family name RPH-NOVEL-3 (all species)
Seed GUGAUAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) R. philippinarum
Node of Origin (family) R. philippinarum
Genome context
(Ruditapes_GCA_009026015)
CM018531.1: 20317456-20317513 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUACACAUGAAAGCAGAGACUUUUUGUACGUGAUAGGUCUUGCAUUGCUGUUUAGUUUAUUUCACCAAUGCAUAAUCUACCACUGUAUAAAUUUCUCUCGACACUACUAGGAAUGG
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Structure
        10          20        30         40        50        
UCAUACACAUGAAAGCA--|   CUU       -   A     CU       C  UUUAG 
                   GAGA   UUUGUAC GUG UAGGU  UGCAUUG UG     U
                   CUCU   AAAUAUG CAC AUCUA  ACGUAAC AC     U
GGUAAGGAUCAUCACAGCU^   UU-       U   C     AU       C  UUUAU 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Novel-3_5p

mirBase accessionNone
Sequence
0- CGUGAUAGGUCUUGCAUUGCUG -22
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Co-mature sequence

Rph-Novel-3_3p

mirBase accessionNone
Sequence
36- CCAAUGCAUAAUCUACCACUGU -58
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