MirGeneDB ID | Rph-Novel-3 |
Family name |
RPH-NOVEL-3 (all species) |
Seed |
GUGAUAG |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
R. philippinarum
|
Node of Origin (family) |
R. philippinarum
|
Genome context (Ruditapes_GCA_009026015) |
CM018531.1: 20317456-20317513 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCAUACACAUGAAAGCAGAGACUUUUUGUACGUGAUAGGUCUUGCAUUGCUGUUUAGUUUAUUUCACCAAUGCAUAAUCUACCACUGUAUAAAUUUCUCUCGACACUACUAGGAAUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAUACACAUGAAAGCA--| CUU - A CU C UUUAG
GAGA UUUGUAC GUG UAGGU UGCAUUG UG U
CUCU AAAUAUG CAC AUCUA ACGUAAC AC U
GGUAAGGAUCAUCACAGCU^ UU- U C AU C UUUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Mature sequence |
Rph-Novel-3_5p |
mirBase accession | None |
Sequence |
0- CGUGAUAGGUCUUGCAUUGCUG -22
Get sequence
|
Co-mature sequence |
Rph-Novel-3_3p |
mirBase accession | None |
Sequence |
36- CCAAUGCAUAAUCUACCACUGU -58
Get sequence
|