MirGeneDB 3.0

MirGeneDB ID

Rph-Novel-4

Family name RPH-NOVEL-4 (all species)
Seed AAUGCCC
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) R. philippinarum
Node of Origin (family) R. philippinarum
Genome context
(Ruditapes_GCA_009026015)
CM018536.1: 3932879-3932939 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCUAACGCUGCGCUGAUGUUGCAAAAUGAGGAGCUUAUUGAGGCGUUUCAGUGAUUAAAUAUAUUUGGAAUGCCCCAAGAAGUUUCUUAUUUUGGGCAUUAAAUUCUAAACAGAAAAUA
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Structure
        10           20        30        40        50          
GGUCUAACGCUGCGCUG---|    G               A   A         GUGAUUA 
                    AUGUU CAAAAUGAGGAGCUU UUG GGCGUUUCA       \
                    UACGG GUUUUAUUCUUUGAA AAC CCGUAAGGU       A
AUAAAAGACAAAUCUUAAAU^    -               G   C         UUAUAUA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Novel-4_5p*

mirBase accessionNone
Sequence
0- AGGAGCUUAUUGAGGCGUUUCA -22
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Mature sequence

Rph-Novel-4_3p

mirBase accessionNone
Sequence
39- GAAUGCCCCAAGAAGUUUCUUA -61
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