MirGeneDB ID | Rph-Novel-4 |
Family name |
RPH-NOVEL-4 (all species) |
Seed |
AAUGCCC |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
R. philippinarum
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Node of Origin (family) |
R. philippinarum
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Genome context (Ruditapes_GCA_009026015) |
CM018536.1: 3932879-3932939 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GGUCUAACGCUGCGCUGAUGUUGCAAAAUGAGGAGCUUAUUGAGGCGUUUCAGUGAUUAAAUAUAUUUGGAAUGCCCCAAGAAGUUUCUUAUUUUGGGCAUUAAAUUCUAAACAGAAAAUA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUCUAACGCUGCGCUG---| G A A GUGAUUA
AUGUU CAAAAUGAGGAGCUU UUG GGCGUUUCA \
UACGG GUUUUAUUCUUUGAA AAC CCGUAAGGU A
AUAAAAGACAAAUCUUAAAU^ - G C UUAUAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | UGUG in loop |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Novel-4_5p* |
mirBase accession | None |
Sequence |
0- AGGAGCUUAUUGAGGCGUUUCA -22
Get sequence
|
Mature sequence |
Rph-Novel-4_3p |
mirBase accession | None |
Sequence |
39- GAAUGCCCCAAGAAGUUUCUUA -61
Get sequence
|