| MirGeneDB ID | Rph-Novel-4 |
|---|
| Family name |
RPH-NOVEL-4 (all species) |
|---|
| Seed |
GUGAUAG |
|---|
| Species |
Japanese carpet shell (Ruditapes philippinarum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
R. philippinarum
|
|---|
| Node of Origin (family) |
R. philippinarum
|
|---|
Genome context
(Ruditapes_GCA_009026015) |
CM018531.1: 20317456-20317513 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCAUACACAUGAAAGCAGAGACUUUUUGUACGUGAUAGGUCUUGCAUUGCUGUUUAGUUUAUUUCACCAAUGCAUAAUCUACCACUGUAUAAAUUUCUCUCGACACUACUAGGAAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCAUACACAUGAAAGCA--| CUU - A CU C UUUAG
GAGA UUUGUAC GUG UAGGU UGCAUUG UG U
CUCU AAAUAUG CAC AUCUA ACGUAAC AC U
GGUAAGGAUCAUCACAGCU^ UU- U C AU C UUUAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Rph-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CGUGAUAGGUCUUGCAUUGCUG -22
Get sequence
|
|---|
| Co-mature sequence |
Rph-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CCAAUGCAUAAUCUACCACUGU -58
Get sequence
|
|---|
