MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-96-P1i

Family name MIR-96 (all species)
Seed UUUGGCA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-96-P1h  Rph-Mir-96-P2  Rph-Mir-96-P3 
Orthologues Agr-Mir-96-P1i  Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Esc-Mir-96-P1i  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hru-Mir-96-P1i  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1i  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mgi-Mir-96-P1i  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mom-Mir-96-P1i  Mun-Mir-96-P1  Neu-Mir-96-P1  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ovu-Mir-96-P1i  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Pve-Mir-96-P1i  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)		 CM018524.1: 23401561-23401620 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUUUCUUCAAGAUGACGCAUUGCUCAUUAUUUGGCACUUGUGGAAUAAUCAGUAUUUCUUUCUUUGAUUAUACACUGGUGCCAAGUAACUAACAGCGUCUUUCAACAUAUGCUGUCGU
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Structure
        10            20        30        40        50          
UGGUUUCUUCAAGAUGA----|  AU  CUCA            U   GA       GUAUUU 
                     CGC  UG    UUAUUUGGCACU GUG  AUAAUCA      \
                     GCG  AC    AAUGAACCGUGG CAC  UAUUAGU      C
UGCUGUCGUAUACAACUUUCU^  --  AAUC            U   A-       UUCUUU 
.       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-96-P1i_5p
mirBase accessionNone
Sequence 
0- AUUUGGCACUUGUGGAAUAAUCA -23
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Star sequence

Rph-Mir-96-P1i_3p*
mirBase accessionNone
Sequence 
38- AUUAUACACUGGUGCCAAGUAA -60
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