MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-96-P1

Family name MIR-96 (all species)
Seed UUGGCAC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-96
Paralogues Cpi-Mir-96-P2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2 
Orthologues Ami-Mir-96-P1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cgi-Mir-96-P1h  Cgi-Mir-96-P1i  Cin-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1w  Csc-Mir-96-P1x  Cte-Mir-96-P1  Dno-Mir-96-P1  Dre-Mir-96-P1a  Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Efe-Mir-96-P1  Esc-Mir-96-P1h  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Hsa-Mir-96-P1  Isc-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1h  Lgi-Mir-96-P1i  Loc-Mir-96-P1  Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1r-v2  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P1u  Mal-Mir-96-P1a  Mal-Mir-96-P1b  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Npo-Mir-96-P1h  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ovu-Mir-96-P1h  Pbv-Mir-96-P1  Pfl-Mir-96-P1  Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sme-Mir-96-P1j  Sme-Mir-96-P1k  Spt-Mir-96-P1  Spu-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  Tni-Mir-96-P1b  Xbo-Mir-96-P1  Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xtr-Mir-96-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584440: 1633482-1633545 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1)
Mir-96-P3-v1 JH584440: 1633083-1633144 [+] UCSC Ensembl
Mir-96-P3-v2 JH584440: 1633084-1633143 [+] UCSC Ensembl
Mir-96-P1 JH584440: 1633482-1633545 [+] UCSC Ensembl
Mir-96-P2 JH584440: 1644025-1644089 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUGGGAUCCGUAUCUCUGCUUCGCCCGGUUUGGCACUAGCACAUUUUUGCUUUUGUAUAACUACUUUGAGCAAUUAUGUGUAGUGCCAAUCUGGGAGAAGACGGAAGUGGCAGCGCUCUGUG
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Structure
        10         20         30        40        50        60  
ACUUGGGAUCCGUAUCU-   -|   G     U         G     UU     UUUGUAUA 
                  CUG CUUC CCCGG UUGGCACUA CACAU  UUGCU        \
                  GGC GAAG GGGUC AACCGUGAU GUGUA  AACGA        A
GUGUCUCGCGACGGUGAA   A^   A     U         -     UU     GUUUCAUC 
  120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-96-P1_5p

mirBase accessionMIMAT0037707
Sequence
0- UUUGGCACUAGCACAUUUUUGCU -23
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Star sequence

Cpi-Mir-96-P1_3p*

mirBase accessionNone
Sequence
42- CAAUUAUGUGUAGUGCCAAUCU -64
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