Mir-96-P1r-v2

MirGeneDB ID

Lpo-Mir-96-P1r-v2

Family name

MIR-96 (all species)

Seed

UGGCACU

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Lpo-Mir-96-P2r Lpo-Mir-96-P2s-v1 Lpo-Mir-96-P2s-v2 Lpo-Mir-96-P2t-v1 Lpo-Mir-96-P2t-v2 Lpo-Mir-96-P2u Lpo-Mir-96-P2v-v1 Lpo-Mir-96-P2v-v2 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Efe-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665929.1: 529177-529235 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UCGAACAAGCAAGAAUUACUCCUCCGUUCUUUGGCACUGGCACAUUUUUGUGUUUUAUUUCUACAACAAAGAUUGUGUUAGUGUCAAGCAACAUGGGGAGAUGAACAACAAAAUGAACA

Get precursor sequence

Structure

        10         20         30        40         50        
UCGAACAAGCAAGAAUUA-      C-   C              -|       GUUUUA 
                   CUCCUC  GUU UUUGGCACUGGCAC AUUUUUGU      U
                   GAGGGG  CAA GAACUGUGAUUGUG UAGAAACA      U
ACAAGUAAAACAACAAGUA      UA   C              U^       ACAUCU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Ma	Ma	To

Mature sequence

Lpo-Mir-96-P1r-v2_5p

mirBase accession

None

Sequence

0- UUGGCACUGGCACAUUUUUGU -21

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Star sequence

Lpo-Mir-96-P1r-v2_3p*

mirBase accession

None

Sequence

37- AAAGAUUGUGUUAGUGUCAAGC -59

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