MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-96-P1

Family name MIR-96 (all species)
Seed UUGGCAC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-96
Paralogues Sko-Mir-96-P2  Sko-Mir-96-P3 
Orthologues Agr-Mir-96-P1h  Agr-Mir-96-P1i  Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1w  Csc-Mir-96-P1x  Cte-Mir-96-P1  Dgr-Mir-96-P1m  Dgr-Mir-96-P1n  Dno-Mir-96-P1  Dre-Mir-96-P1a  Eba-Mir-96-P1  Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Esc-Mir-96-P1i  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Gsa-Mir-96-P1y  Gsa-Mir-96-P1z  Hmi-Mir-96-P1l1  Hmi-Mir-96-P1l2  Hru-Mir-96-P1h  Hru-Mir-96-P1i  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1h  Lgi-Mir-96-P1i  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1r-v2  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P1u  Mal-Mir-96-P1a  Mal-Mir-96-P1b  Mdo-Mir-96-P1  Mgi-Mir-96-P1h  Mgi-Mir-96-P1i  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mom-Mir-96-P1h  Mom-Mir-96-P1i  Mun-Mir-96-P1  Neu-Mir-96-P1  Npo-Mir-96-P1h  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ofu-Mir-96-P1p  Ofu-Mir-96-P1q  Ovu-Mir-96-P1i  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pdu-Mir-96-P1v  Pdu-Mir-96-P1w  Pdu-Mir-96-P1x  Pfl-Mir-96-P1  Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pmi-Mir-96-P1  Pve-Mir-96-P1h  Pve-Mir-96-P1i  Rno-Mir-96-P1  Rph-Mir-96-P1h  Rph-Mir-96-P1i  Sha-Mir-96-P1  Sma-Mir-96-P1  Sme-Mir-96-P1j  Sme-Mir-96-P1k  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  Tni-Mir-96-P1b  War-Mir-96-P1  Xbo-Mir-96-P1  Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xtr-Mir-96-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Skow_1.1)		 NW_003114962.1: 36626-36685 [+]
Clustered miRNAs
(< 50kb from Mir-96-P1)		 Mir-96-P3 NW_003114962.1: 34337-34398 [+]
Mir-96-P1 NW_003114962.1: 36626-36685 [+]
Mir-96-P2 NW_003114962.1: 37045-37105 [+]
Precursor
(pre-Mir +30nt flank)
CAACAACAAUAACGGAACGUUCUCUUCCUUUUUGGCACUAGCACAUUUUGCUGUCUUUUUAUAUCAGCGAAAGUAUGCUAGUGGCAAGCAGGACGUCAUCGACCUUUCAUCCGGGUACUU
Get precursor sequence
Structure
        10          20        30        40         50         
CAACAACAAUAACGGAA--  UUCUCU    U    G        CA-|      GUCUUU 
                   CG      UCCU UUUG CACUAGCA   UUUUGCU      \
                   GC      AGGA GAAC GUGAUCGU   AAAGCGA      U
UUCAUGGGCCUACUUUCCA  UACUGC    C    G        AUG^      CUAUAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Sko-Mir-96-P1_5p
mirBase accessionMIMAT0009622
Sequence 
0- UUUGGCACUAGCACAUUUUGCU -22
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Star sequence

Sko-Mir-96-P1_3p*
mirBase accessionMIMAT0019156
Sequence 
37- CGAAAGUAUGCUAGUGGCAAGCA -60
Get sequence