Mir-96-P1l1

MirGeneDB ID

Hmi-Mir-96-P1l1

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Panther worm (Hofstenia miamia)

MiRBase ID

Paralogues

Hmi-Mir-96-P1l2

Orthologues

Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Eba-Mir-96-P1 Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Neu-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 War-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Hofstenia_miamia.HmiaM1.dna.nonchromosomal)

SCFE01014465.1: 544-599 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAUUUAGAUCCACUGUAACAGCUGCCUUUGUUUGGCACUGGCACAUUUUGCUUAAAGUCAUUAGCAAAUUGUGUGGGUGUCAGGCAUUCAUGUAAUUUCUACGCCUUCGAAAUAAA

Get precursor sequence

Structure

        10        20           30        40        50       
UAUUUAGAUCCACUGUAACA---| UGCCUU           G     U      UAAA 
                       GC      UGUUUGGCACU GCACA UUUGCU    G
                       UG      ACGGACUGUGG UGUGU AAACGA    U
AAAUAAAGCUUCCGCAUCUUUAA^ UACUU-           G     U      UUAC 
    110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Mature sequence

Hmi-Mir-96-P1l1_5p

mirBase accession

None

Sequence

0- UUUGGCACUGGCACAUUUUGCU -22

Get sequence

Star sequence

Hmi-Mir-96-P1l1_3p*

mirBase accession

None

Sequence

34- CAAAUUGUGUGGGUGUCAGGCA -56

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