MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-96-P1

Family name MIR-96 (all species)
Seed UUGGCAC
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-96
Paralogues Gga-Mir-96-P2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2 
Orthologues Agr-Mir-96-P1h  Agr-Mir-96-P1i  Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1w  Csc-Mir-96-P1x  Cte-Mir-96-P1  Dgr-Mir-96-P1m  Dgr-Mir-96-P1n  Dno-Mir-96-P1  Dre-Mir-96-P1a  Eba-Mir-96-P1  Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Esc-Mir-96-P1i  Ete-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Gsa-Mir-96-P1y  Gsa-Mir-96-P1z  Hmi-Mir-96-P1l1  Hmi-Mir-96-P1l2  Hru-Mir-96-P1h  Hru-Mir-96-P1i  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1h  Lgi-Mir-96-P1i  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1r-v2  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P1u  Mal-Mir-96-P1a  Mal-Mir-96-P1b  Mdo-Mir-96-P1  Mgi-Mir-96-P1h  Mgi-Mir-96-P1i  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mom-Mir-96-P1h  Mom-Mir-96-P1i  Mun-Mir-96-P1  Neu-Mir-96-P1  Npo-Mir-96-P1h  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ofu-Mir-96-P1p  Ofu-Mir-96-P1q  Ovu-Mir-96-P1i  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pdu-Mir-96-P1v  Pdu-Mir-96-P1w  Pdu-Mir-96-P1x  Pfl-Mir-96-P1  Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pmi-Mir-96-P1  Pve-Mir-96-P1h  Pve-Mir-96-P1i  Rno-Mir-96-P1  Rph-Mir-96-P1h  Rph-Mir-96-P1i  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Sme-Mir-96-P1j  Sme-Mir-96-P1k  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  Tni-Mir-96-P1b  War-Mir-96-P1  Xbo-Mir-96-P1  Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xtr-Mir-96-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
1: 1479737-1479800 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1)
Mir-96-P2 1: 1478713-1478777 [-] UCSC Ensembl
Mir-96-P1 1: 1479737-1479800 [-] UCSC Ensembl
Mir-96-P3-v1 1: 1479855-1479916 [-] UCSC Ensembl
Mir-96-P3-v2 1: 1479856-1479915 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGCGGGGCCGCCGCGCCGCCCGGCCCGCUUUGGCACUAGCACAUUUUUGCUUUGCUUUAUGUGUUUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGAGAAGGCGGAGAGAGCACCACGGGAUG
Get precursor sequence
Structure
        10         20         30        40        50        60  
CCCGCGGGGCCGCCGCG-     CGG-|   CU         G     UU     UUGCUUUA 
                  CCGCC    CCCG  UUGGCACUA CACAU  UUGCU        \
                  GGCGG    GGGU  AACCGUGAU GUGUA  AACGA        U
GUAGGGCACCACGAGAGA     AAGA^   AU         -     UU     GUUUUGUG 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-96-P1_5p

mirBase accessionMIMAT0037540
Sequence
0- UUUGGCACUAGCACAUUUUUGCU -23
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Star sequence

Gga-Mir-96-P1_3p*

mirBase accessionMIMAT0037541
Sequence
42- CAAUUAUGUGUAGUGCCAAUAU -64
Get sequence