MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-96-P1k

Family name MIR-96 (all species)
Seed UUGGCAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-96b
Paralogues Sme-Mir-96-P1j 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000112_dd_Smes_g4_112: 1967642-1967703 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUUUAUUUUAUCAAACAGUUGUCUGAAAUUUGGCACUUAAGGAAUCGUCACCAGUUGCAUUGAUAUUGUGACAUUUCUAAGUGUCUAUUAUCAGAGAUUGGUUAUCAUCUAACUUAUUUC
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Structure
        10           20        30        40        50        60 
AGUUUUAUUUUAUCAAA---|    G     AAUUU        A     C     CAGUUGC 
                    CAGUU UCUGA     GGCACUUA GGAAU GUCAC       A
                    GUUAG AGACU     CUGUGAAU CUUUA CAGUG       U
CUUUAUUCAAUCUACUAUUG^    -     AUUAU        -     -     UUAUAGU 
120       110       100         90        80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-96-P1k_5p
mirBase accessionMIMAT0011273
Sequence 
0- UUUGGCACUUAAGGAAUCGUCAC -23
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Star sequence

Sme-Mir-96-P1k_3p* (predicted)
mirBase accessionMIMAT0012163
Sequence 
41- GACAUUUCUAAGUGUCUAUUA -62
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