Mir-96-P1

MirGeneDB ID

Cin-Mir-96-P1

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-96

Paralogues

Cin-Mir-96-P2 Cin-Mir-96-P3

Orthologues

Agr-Mir-96-P1h Agr-Mir-96-P1i Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Csc-Mir-96-P1w Csc-Mir-96-P1x Cte-Mir-96-P1 Dgr-Mir-96-P1m Dgr-Mir-96-P1n Dno-Mir-96-P1 Dre-Mir-96-P1a Eba-Mir-96-P1 Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P1g Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Esc-Mir-96-P1i Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Gmo-Mir-96-P1a Gsa-Mir-96-P1y Gsa-Mir-96-P1z Hmi-Mir-96-P1l1 Hmi-Mir-96-P1l2 Hru-Mir-96-P1h Hru-Mir-96-P1i Hsa-Mir-96-P1 Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lgi-Mir-96-P1h Lgi-Mir-96-P1i Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1r-v2 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Mal-Mir-96-P1a Mal-Mir-96-P1b Mdo-Mir-96-P1 Mgi-Mir-96-P1h Mgi-Mir-96-P1i Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mom-Mir-96-P1h Mom-Mir-96-P1i Mun-Mir-96-P1 Neu-Mir-96-P1 Npo-Mir-96-P1h Npo-Mir-96-P1i Oan-Mir-96-P1 Ocu-Mir-96-P1 Ofu-Mir-96-P1p Ofu-Mir-96-P1q Ovu-Mir-96-P1i Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pdu-Mir-96-P1v Pdu-Mir-96-P1w Pdu-Mir-96-P1x Pfl-Mir-96-P1 Pma-Mir-96-P1o1 Pma-Mir-96-P1o2 Pmi-Mir-96-P1 Pve-Mir-96-P1h Pve-Mir-96-P1i Rno-Mir-96-P1 Rph-Mir-96-P1h Rph-Mir-96-P1i Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Sme-Mir-96-P1j Sme-Mir-96-P1k Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Tni-Mir-96-P1a Tni-Mir-96-P1b War-Mir-96-P1 Xbo-Mir-96-P1 Xla-Mir-96-P1c Xla-Mir-96-P1d Xtr-Mir-96-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(ci3)

HT000094.1: 542651-542705 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1)

Mir-96-P2 HT000094.1: 542170-542234 [-] UCSC Ensembl
Mir-96-P1 HT000094.1: 542651-542705 [-] UCSC Ensembl
Mir-96-P3 HT000094.1: 543640-543692 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAUAGAAAUCUCAUUCGAACCUCUUUUUAUUUGGCACUUGCACAAUAUUGAUUCGACGUAUCAAUUCUGGACAAGUGCCUACAAAAAACUGGUUUCCACACAACCGAAGUUAAG

Get precursor sequence

Structure

        10          20        30        40        50       
GGAUAGAAAUCUCAUUC--|    UC     AUUU        CA  AU     UUCG 
                   GAACC  UUUUU    GGCACUUG  CA  AUUGA    \
                   UUUGG  AAAAA    CCGUGAAC  GU  UAACU    A
GAAUUGAAGCCAACACACC^    UC     ACAU        AG  CU     AUGC 
   110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

C-	C-	C-	C-	C-	C-	C-	C-	C-	C-	Ga	La	La

Mature sequence

Cin-Mir-96-P1_5p

mirBase accession

MIMAT0016403

Sequence

0- UUUGGCACUUGCACAAUAUUGA -22

Get sequence

Star sequence

Cin-Mir-96-P1_3p*

mirBase accession

MIMAT0016404

Sequence

33- AAUUCUGGACAAGUGCCUACAA -55

Get sequence