MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-96-P1w

Family name MIR-96 (all species)
Seed UUUGGCA
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-96-P1v  Pdu-Mir-96-P1x  Pdu-Mir-96-P2  Pdu-Mir-96-P3 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1w  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000039.1: 3782469-3782528 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UACAAUUCUUCAGGGAUUUAACCAUCUUGUAUUUGGCACUAGUGGAAUGGUCAUCUGUUAUCCGAUGUGAGUUUCAUUAAUGCCAACACCUAGAGGGUUAUCGUCCGGCUAUUUAACAAC
Get precursor sequence
Structure
        10          20        30        40        50         
UACAAUUCUUCAGGGAUU--|    A   UGUAU      C         GGU AUCUGU 
                    UAACC UCU     UUGGCA UAGUGGAAU   C      U
                    AUUGG AGA     AACCGU AUUACUUUG   G      A
CAACAAUUUAUCGGCCUGCU^    G   UCCAC      A         AGU UAGCCU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-96-P1w_5p
mirBase accessionNone
Sequence 
0- AUUUGGCACUAGUGGAAUGGUC -22
Get sequence
Star sequence

Pdu-Mir-96-P1w_3p*
mirBase accessionNone
Sequence 
38- GAGUUUCAUUAAUGCCAACACC -60
Get sequence