MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-96-P1v

Family name MIR-96 (all species)
Seed UUGGCAC
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-96-P1w  Pdu-Mir-96-P1x  Pdu-Mir-96-P2  Pdu-Mir-96-P3 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 165849565-165849622 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCUCCCUCUGAACACUGAUUGGUUCUACUUGGCACUGGCGGAAUAAUCACGUGACUUUCAAGUGGUGUUCCCCUGGUGGCAAACAGAAACGUCAGAAUCCACGGCAGUGUACGGC
Get precursor sequence
Structure
        10           20        30        40        50         
GCUUCUCCCUCUGAACA---|    UGG    AC   G   UG C      A    GUGAC 
                    CUGAU   UUCU  UUG CAC  G GGAAUA UCAC     \
                    GACUG   AAGA  AAC GUG  C CCUUGU GGUG     U
CGGCAUGUGACGGCACCUAA^    CA-    CA   G   GU C      -    AACUU 
      110       100         90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-96-P1v_5p
mirBase accessionNone
Sequence 
0- CUUGGCACUGGCGGAAUAAUCAC -23
Get sequence
Star sequence

Pdu-Mir-96-P1v_3p*
mirBase accessionNone
Sequence 
36- GGUGUUCCCCUGGUGGCAAACA -58
Get sequence