Mir-96-P1

MirGeneDB ID

Hsa-Mir-96-P1

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-96

Paralogues

Hsa-Mir-96-P2 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2

Orthologues

Agr-Mir-96-P1h Agr-Mir-96-P1i Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Csc-Mir-96-P1w Csc-Mir-96-P1x Cte-Mir-96-P1 Dgr-Mir-96-P1m Dgr-Mir-96-P1n Dno-Mir-96-P1 Dre-Mir-96-P1a Eba-Mir-96-P1 Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P1g Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Esc-Mir-96-P1i Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Gmo-Mir-96-P1a Gsa-Mir-96-P1y Gsa-Mir-96-P1z Hmi-Mir-96-P1l1 Hmi-Mir-96-P1l2 Hru-Mir-96-P1h Hru-Mir-96-P1i Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lgi-Mir-96-P1h Lgi-Mir-96-P1i Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1r-v2 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Mal-Mir-96-P1a Mal-Mir-96-P1b Mdo-Mir-96-P1 Mgi-Mir-96-P1h Mgi-Mir-96-P1i Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mom-Mir-96-P1h Mom-Mir-96-P1i Mun-Mir-96-P1 Neu-Mir-96-P1 Npo-Mir-96-P1h Npo-Mir-96-P1i Oan-Mir-96-P1 Ocu-Mir-96-P1 Ofu-Mir-96-P1p Ofu-Mir-96-P1q Ovu-Mir-96-P1i Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pdu-Mir-96-P1v Pdu-Mir-96-P1w Pdu-Mir-96-P1x Pfl-Mir-96-P1 Pma-Mir-96-P1o1 Pma-Mir-96-P1o2 Pmi-Mir-96-P1 Pve-Mir-96-P1h Pve-Mir-96-P1i Rno-Mir-96-P1 Rph-Mir-96-P1h Rph-Mir-96-P1i Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Sme-Mir-96-P1j Sme-Mir-96-P1k Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Tni-Mir-96-P1a Tni-Mir-96-P1b War-Mir-96-P1 Xbo-Mir-96-P1 Xla-Mir-96-P1c Xla-Mir-96-P1d Xtr-Mir-96-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr7: 129774698-129774761 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1)

Mir-96-P2 chr7: 129770406-129770470 [-] UCSC Ensembl
Mir-96-P1 chr7: 129774698-129774761 [-] UCSC Ensembl
Mir-96-P3-v1 chr7: 129774927-129774988 [-] UCSC Ensembl
Mir-96-P3-v2 chr7: 129774928-129774987 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCCGCACCAGUGCCAUCUGCUUGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAAAGCAGGACCCGCAGCUGCGUCCGC

Get precursor sequence

Structure

        10          20        30        40        50        60  
GCCCGCACCAGUGCCAU--|     GG  G  U        A      UU     UGUGUCUC 
                   CUGCUU  CC AU UUGGCACU GCACAU  UUGCU        \
                   GACGAA  GG UA AACCGUGA CGUGUA  AACGA        U
CGCCUGCGUCGACGCCCAG^     AA  G  U        -      CU     GUCUCGCC 
  120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-96-P1_5p

mirBase accession

MIMAT0000095

Sequence

0- UUUGGCACUAGCACAUUUUUGCU -23

Get sequence

Proposed targets

microrna.org: MIMAT0000095
TargetScanVert: hsa-miR-96-5p
TargetMiner: hsa-miR-96-5p
miRDB: MIMAT0000095

Star sequence

Hsa-Mir-96-P1_3p*

mirBase accession

MIMAT0004510

Sequence

42- CAAUCAUGUGCAGUGCCAAUAU -64

Get sequence

Proposed targets

microrna.org: MIMAT0004510
TargetScanVert: hsa-miR-96-3p
TargetMiner: hsa-miR-96-3p
miRDB: MIMAT0004510