MirGeneDB 3.0

MirGeneDB ID

Ofu-Mir-96-P1p

Family name MIR-96 (all species)
Seed UUGGCAC
Species Tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues Ofu-Mir-96-P1q  Ofu-Mir-96-P2  Ofu-Mir-96-P3 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) O. fusiformis
Node of Origin (family) Bilateria
Genome context
(GCA_903813345.2_Owenia)
CAIIXF020000004.1: 31239392-31239454 [+]
Precursor
(pre-Mir +30nt flank)
AACCCAUGCCUUGCUUUGCGUCACCCUGUAUUUGGCACUUUAGGAAUCACCUGGUGUUUUCUAAAGACAGGGUGUCUCAUAAAGUGCCAAUUAUAGAGUAAUGCACCUCUUGCUUAAACCAUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
AACCCAUGCCUUGCUUU--|   C  C     U           G  AU     GGUGUUUU 
                   GCGU AC CUGUA UUGGCACUUUA GA  CACCU        \
                   CGUA UG GAUAU AACCGUGAAAU CU  GUGGG        C
GUACCAAAUUCGUUCUCCA^   A  A     U           A  CU     ACAGAAAU 
 120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
Ow Ow
Mature sequence

Ofu-Mir-96-P1p_5p

mirBase accessionNone
Sequence
0- UUUGGCACUUUAGGAAUCACCU -22
Get sequence
Star sequence

Ofu-Mir-96-P1p_3p* (predicted)

mirBase accessionNone
Sequence
41- GUGUCUCAUAAAGUGCCAAUUA -63
Get sequence