Mir-96-P1

MirGeneDB ID

Isc-Mir-96-P1

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Deer tick (Ixodes scapularis)

MiRBase ID

isc-mir-96

Paralogues

Isc-Mir-96-P2 Isc-Mir-96-P3

Orthologues

Agr-Mir-96-P1h Agr-Mir-96-P1i Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Csc-Mir-96-P1w Csc-Mir-96-P1x Cte-Mir-96-P1 Dgr-Mir-96-P1m Dgr-Mir-96-P1n Dno-Mir-96-P1 Dre-Mir-96-P1a Eba-Mir-96-P1 Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P1g Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Esc-Mir-96-P1i Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Gmo-Mir-96-P1a Gsa-Mir-96-P1y Gsa-Mir-96-P1z Hmi-Mir-96-P1l1 Hmi-Mir-96-P1l2 Hru-Mir-96-P1h Hru-Mir-96-P1i Hsa-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lgi-Mir-96-P1h Lgi-Mir-96-P1i Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1r-v2 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Mal-Mir-96-P1a Mal-Mir-96-P1b Mdo-Mir-96-P1 Mgi-Mir-96-P1h Mgi-Mir-96-P1i Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mom-Mir-96-P1h Mom-Mir-96-P1i Mun-Mir-96-P1 Neu-Mir-96-P1 Npo-Mir-96-P1h Npo-Mir-96-P1i Oan-Mir-96-P1 Ocu-Mir-96-P1 Ofu-Mir-96-P1p Ofu-Mir-96-P1q Ovu-Mir-96-P1i Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pdu-Mir-96-P1v Pdu-Mir-96-P1w Pdu-Mir-96-P1x Pfl-Mir-96-P1 Pma-Mir-96-P1o1 Pma-Mir-96-P1o2 Pmi-Mir-96-P1 Pve-Mir-96-P1h Pve-Mir-96-P1i Rno-Mir-96-P1 Rph-Mir-96-P1h Rph-Mir-96-P1i Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Sme-Mir-96-P1j Sme-Mir-96-P1k Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Tni-Mir-96-P1a Tni-Mir-96-P1b War-Mir-96-P1 Xbo-Mir-96-P1 Xla-Mir-96-P1c Xla-Mir-96-P1d Xtr-Mir-96-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCF_016920785.2_ASM1692078v2_ISC)

NW_024609883.1: 66568275-66568335 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1)

Mir-96-P1 NW_024609883.1: 66568275-66568335 [-] Ensembl
Mir-96-P3 NW_024609883.1: 66587829-66587891 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCCGCCGCCUGUCAAACUCGCCUUCCGUUUUUUGGCACUAGCACAUUUUUGUGUUUCGAUGCUACGACAAAAAUUGUGGUAGUGUCAAGCAAUAGGAAGAGUCUGCAAUGCGACCGAAAGA

Get precursor sequence

Structure

        10        20          30        40         50         
CCCGCCGCCUGUCAAACUC  -     -   U          G   -|       GUUUCG 
                   GC CUUCC GUU UUUGGCACUA CAC AUUUUUGU      A
                   UG GAAGG UAA GAACUGUGAU GUG UAAAAACA      U
AGAAAGCCAGCGUAACGUC  A     A   C          G   U^       GCAUCG 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Sa	Sa	To

Mature sequence

Isc-Mir-96-P1_5p

mirBase accession

MIMAT0012708

Sequence

0- UUUGGCACUAGCACAUUUUUGU -22

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Co-mature sequence

Isc-Mir-96-P1_3p

mirBase accession

None

Sequence

38- AAAAAUUGUGGUAGUGUCAAGCA -61

Get sequence