MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-96-P3

Family name MIR-96 (all species)
Seed AUGGCAC
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-263a
Paralogues Isc-Mir-96-P1  Isc-Mir-96-P2 
Orthologues Aae-Mir-96-P3  Aga-Mir-96-P3  Agr-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Ava-Mir-96-P3y  Ava-Mir-96-P3z  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bko-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cin-Mir-96-P3  Cja-Mir-96-P3-v1  Cja-Mir-96-P3-v2  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cmi-Mir-96-P3-v1  Cmi-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Csc-Mir-96-P3w  Csc-Mir-96-P3x  Cte-Mir-96-P3  Dan-Mir-96-P3  Dgr-Mir-96-P3  Dlo-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3a-v1  Dre-Mir-96-P3a-v2  Dsi-Mir-96-P3  Dya-Mir-96-P3  Eba-Mir-96-P3  Ebu-Mir-96-P3e  Ebu-Mir-96-P3f  Eca-Mir-96-P3-v1  Eca-Mir-96-P3-v2  Egr-Mir-96-P3  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Gja-Mir-96-P3-v1  Gja-Mir-96-P3-v2  Gmo-Mir-96-P3a-v1  Gmo-Mir-96-P3a-v2  Gpa-Mir-96-P3  Gsp-Mir-96-P3  Hme-Mir-96-P3  Hru-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Lhy-Mir-96-P3  Llo-Mir-96-P3  Loc-Mir-96-P3-v1  Loc-Mir-96-P3-v2  Lpo-Mir-96-P3r  Lpo-Mir-96-P3s  Lpo-Mir-96-P3t  Lpo-Mir-96-P3u  Lpo-Mir-96-P3v  Mal-Mir-96-P3a-v1  Mal-Mir-96-P3a-v2  Mal-Mir-96-P3b-v1  Mal-Mir-96-P3b-v2  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mgi-Mir-96-P3  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmr-Mir-96-P3-v1  Mmr-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Mom-Mir-96-P3  Mun-Mir-96-P3-v1  Mun-Mir-96-P3-v2  Neu-Mir-96-P3-v1  Neu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Ofu-Mir-96-P3  Pab-Mir-96-P3-v1  Pab-Mir-96-P3-v2  Pau-Mir-96-P3g  Pau-Mir-96-P3h  Pbv-Mir-96-P3-v1  Pbv-Mir-96-P3-v2  Pca-Mir-96-P3  Pcr-Mir-96-P3  Pdu-Mir-96-P3  Pfl-Mir-96-P3  Pma-Mir-96-P3o1  Pma-Mir-96-P3o2  Pmi-Mir-96-P3  Pve-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Rph-Mir-96-P3  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Snu-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sro-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tni-Mir-96-P3a  Tni-Mir-96-P3b  Tur-Mir-96-P3  War-Mir-96-P3  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3c-v2  Xla-Mir-96-P3d-v1  Xla-Mir-96-P3d-v2  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609883.1: 66587829-66587891 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3)		 Mir-96-P1 NW_024609883.1: 66568275-66568335 [-] Ensembl
Mir-96-P3 NW_024609883.1: 66587829-66587891 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GACAAUUUUUUUGCCUUCCUACCUUCCGUCAAUGGCACUGGAAGAAUUCACGGGGUCUUGAUAGAAAUACCGUGACUUCUCCGGUGCUGUGGAUGGCGGCUAGGCCGACUUCAGCUUGAGCAG
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Structure
        10          20        30        40        50        60 
GACAAUUUUUUUGCCUU--|   C  U     A           A   U      GGUCUUG 
                   CCUA CU CCGUC AUGGCACUGGA GAA UCACGG       A
                   GGAU GG GGUAG UGUCGUGGCCU CUU AGUGCC       U
GACGAGUUCGACUUCAGCC^   C  C     G           -   C      AUAAAGA 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Mature sequence

Isc-Mir-96-P3_5p
mirBase accessionMIMAT0012692
Sequence 
0- AAUGGCACUGGAAGAAUUCACGG -23
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Star sequence

Isc-Mir-96-P3_3p*
mirBase accessionNone
Sequence 
41- GUGACUUCUCCGGUGCUGUGGA -63
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