MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-96-P3a-v2

Family name MIR-96 (all species)
Seed UGGCACU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-183
Paralogues Gmo-Mir-96-P1a  Gmo-Mir-96-P2a  Gmo-Mir-96-P3a-v1 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cmi-Mir-96-P3-v1  Cmi-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3a-v1  Dre-Mir-96-P3a-v2  Dsi-Mir-96-P3  Dya-Mir-96-P3  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Gja-Mir-96-P3-v1  Gja-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Loc-Mir-96-P3-v1  Loc-Mir-96-P3-v2  Mal-Mir-96-P3a-v1  Mal-Mir-96-P3a-v2  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Mun-Mir-96-P3-v1  Mun-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pbv-Mir-96-P3-v1  Pbv-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tni-Mir-96-P3a  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4098: 12670-12729 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3a-v2)
Mir-96-P3a-v1 GeneScaffold_4098: 12669-12730 [+] UCSC Ensembl
Mir-96-P3a-v2 GeneScaffold_4098: 12670-12729 [+] UCSC Ensembl
Mir-96-P1a GeneScaffold_4098: 12976-13039 [+] UCSC Ensembl
Mir-96-P2a GeneScaffold_4098: 13679-13743 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGGCGUAAACACUGACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAGCACACUAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACGUAUACCAC
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Structure
        10          20        30          40        50         
UGGGCGUAAACACUGAC-  -         G      AC--|    GA        UGAAAG 
                  UC CUGUUCUGU UAUGGC    UGGUA  AUUCACUG      C
                  AG GACGAGACA AUACCG    ACCAU  UAAGUGAC      A
CACCAUAUGCACCAAGAA  A         A      GGAU^    --        UAUCAC 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-96-P3a-v2_5p

mirBase accessionMIMAT0044261
Sequence
0- AUGGCACUGGUAGAAUUCACUG -22
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Star sequence

Gmo-Mir-96-P3a-v2_3p* (predicted)

mirBase accessionMIMAT0044262
Sequence
38- GUGAAUUACCAUAGGGCCAUAA -60
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