MirGeneDB 3.0

MirGeneDB ID

Sro-Mir-96-P3

Family name

MIR-96 (all species)

Seed

Species

Roscoff worm (Symsagittifera roscoffensis)

MiRBase ID

Paralogues

Sro-Mir-96-P1

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2 Asu-Mir-96-P3 Ava-Mir-96-P3y Ava-Mir-96-P3z Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Bta-Mir-96-P3-v2 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cfa-Mir-96-P3-v2 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cja-Mir-96-P3-v2 Cli-Mir-96-P3-v1 Cli-Mir-96-P3-v2 Cmi-Mir-96-P3-v1 Cmi-Mir-96-P3-v2 Cpi-Mir-96-P3-v1 Cpi-Mir-96-P3-v2 Cpo-Mir-96-P3-v1 Cpo-Mir-96-P3-v2 Csc-Mir-96-P3w Csc-Mir-96-P3x Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dre-Mir-96-P3a-v2 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Eca-Mir-96-P3-v1 Eca-Mir-96-P3-v2 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Ete-Mir-96-P3-v2 Gga-Mir-96-P3-v1 Gga-Mir-96-P3-v2 Gja-Mir-96-P3-v1 Gja-Mir-96-P3-v2 Gmo-Mir-96-P3a-v1 Gmo-Mir-96-P3a-v2 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Loc-Mir-96-P3-v2 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3a-v2 Mal-Mir-96-P3b-v1 Mal-Mir-96-P3b-v2 Mdo-Mir-96-P3-v1 Mdo-Mir-96-P3-v2 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mml-Mir-96-P3-v2 Mmr-Mir-96-P3-v1 Mmr-Mir-96-P3-v2 Mmu-Mir-96-P3-v1 Mmu-Mir-96-P3-v2 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Mun-Mir-96-P3-v2 Neu-Mir-96-P3-v1 Neu-Mir-96-P3-v2 Oan-Mir-96-P3-v1 Oan-Mir-96-P3-v2 Ocu-Mir-96-P3-v1 Ocu-Mir-96-P3-v2 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pab-Mir-96-P3-v2 Pau-Mir-96-P3g Pau-Mir-96-P3h Pbv-Mir-96-P3-v1 Pbv-Mir-96-P3-v2 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rno-Mir-96-P3-v2 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sha-Mir-96-P3-v2 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sto-Mir-96-P3-v1 Sto-Mir-96-P3-v2 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Tur-Mir-96-P3 War-Mir-96-P3 Xla-Mir-96-P3c-v1 Xla-Mir-96-P3c-v2 Xla-Mir-96-P3d-v1 Xla-Mir-96-P3d-v2 Xtr-Mir-96-P3-v1 Xtr-Mir-96-P3-v2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_025153585.1_SymRos_1_5_genomic)

JANVAR010000428.1: 134270-134333 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUCGCUUCUUUUGCUUGUAGUAAGCUUUGUAUGGCACGCGGAGUUGCUGUUGUCUUCGCAAAAAAUGAACAACAGAACUUUCCGUGCCAAACAAGUUCCAGAUAUAAUUACUAUUGUCAAAAG

Get precursor sequence

Structure

        10        20           30        40        50        60  
GGUCGCUUCUUUUGCUUGUAGUA---|    U  A       CG     G      UCUUCGCA 
                          AGCUU GU UGGCACG  GAGUU CUGUUG        \
                          UUGAA CA ACCGUGC  UUCAA GACAAC        A
GAAAACUGUUAUCAUUAAUAUAGACC^    -  A       CU     -      AAGUAAAA 
  120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

No

Motifs

UG at 5p(-14)

Tissue expression

-

+

Po

Mature sequence

Sro-Mir-96-P3_5p

mirBase accession

None

Sequence

0- UAUGGCACGCGGAGUUGCUGUUG -23

Get sequence

Star sequence

Sro-Mir-96-P3_3p*

mirBase accession

None

Sequence

42- ACAGAACUUUCCGUGCCAAACA -64

Get sequence