Mir-96-P3c-v2

MirGeneDB ID

Xla-Mir-96-P3c-v2

Family name

MIR-96 (all species)

Seed

UGGCACU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-96-P1c Xla-Mir-96-P1d Xla-Mir-96-P2c Xla-Mir-96-P2d Xla-Mir-96-P3c-v1 Xla-Mir-96-P3d-v1 Xla-Mir-96-P3d-v2

Orthologues

Aae-Mir-96-P3 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Bta-Mir-96-P3-v2 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cfa-Mir-96-P3-v2 Cgi-Mir-96-P3 Cin-Mir-96-P3 Cli-Mir-96-P3-v1 Cli-Mir-96-P3-v2 Cmi-Mir-96-P3-v1 Cmi-Mir-96-P3-v2 Cpi-Mir-96-P3-v1 Cpi-Mir-96-P3-v2 Cpo-Mir-96-P3-v1 Cpo-Mir-96-P3-v2 Dan-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2 Dpu-Mir-96-P3 Dsi-Mir-96-P3 Dya-Mir-96-P3 Ete-Mir-96-P3-v1 Ete-Mir-96-P3-v2 Gga-Mir-96-P3-v1 Gga-Mir-96-P3-v2 Gja-Mir-96-P3-v1 Gja-Mir-96-P3-v2 Hme-Mir-96-P3 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Loc-Mir-96-P3-v1 Loc-Mir-96-P3-v2 Mdo-Mir-96-P3-v1 Mdo-Mir-96-P3-v2 Mml-Mir-96-P3-v1 Mml-Mir-96-P3-v2 Mmu-Mir-96-P3-v1 Mmu-Mir-96-P3-v2 Mun-Mir-96-P3-v1 Mun-Mir-96-P3-v2 Oan-Mir-96-P3-v1 Oan-Mir-96-P3-v2 Ocu-Mir-96-P3-v1 Ocu-Mir-96-P3-v2 Pbv-Mir-96-P3-v1 Pbv-Mir-96-P3-v2 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Rno-Mir-96-P3-v1 Rno-Mir-96-P3-v2 Sha-Mir-96-P3-v1 Sha-Mir-96-P3-v2 Sko-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sto-Mir-96-P3-v1 Sto-Mir-96-P3-v2 Tca-Mir-96-P3 Tgu-Mir-96-P3 Xtr-Mir-96-P3-v1 Xtr-Mir-96-P3-v2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030728.1: 77405966-77406025 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCUGGGUGAGCAUCCCUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACAAAAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACAAGACCACG

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Structure

        10          20        30          40        50         
UGCUGGGUGAGCAUCCC-  -         G      AC--|    GA        UGAAAA 
                  UC CUGUUCUGU UAUGGC    UGGUA  AUUCACUG      C
                  AG GACGAGACA AUACCG    ACCAU  UAAGUGAC      A
GCACCAGAACACCAAGAA  A         A      GGAU^    --        UAAAAC 
.       110       100        90        80          70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	He	Re	St	St	St	St

Mature sequence

Xla-Mir-96-P3c-v2_5p

mirBase accession

None

Sequence

0- AUGGCACUGGUAGAAUUCACUG -22

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Star sequence

Xla-Mir-96-P3c-v2_3p*

mirBase accession

None

Sequence

38- GUGAAUUACCAUAGGGCCAUAA -60

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