Mir-96-P1d

MirGeneDB ID

Xla-Mir-96-P1d

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-96

Paralogues

Xla-Mir-96-P1c Xla-Mir-96-P2c Xla-Mir-96-P2d Xla-Mir-96-P3c-v1 Xla-Mir-96-P3c-v2 Xla-Mir-96-P3d-v1 Xla-Mir-96-P3d-v2

Orthologues

Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Eba-Mir-96-P1 Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Neu-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 War-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030729.1: 63428529-63428592 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1d)

Mir-96-P2d NC_030729.1: 63424667-63424731 [-] UCSC Ensembl
Mir-96-P1d NC_030729.1: 63428529-63428592 [-] UCSC Ensembl
Mir-96-P3d-v1 NC_030729.1: 63429415-63429476 [-] UCSC Ensembl
Mir-96-P3d-v2 NC_030729.1: 63429416-63429475 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

NNNNNNNNNAGAGAACUCUGUCUGGCCUGCUUUGGCACUAGCACAUUUUUGCUUUUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGACAAUACAGAAUAUUCUGCAACUAGCC

Get precursor sequence

Structure

        10         20         30        40        50        60  
NNNNNNNNNAGAGAACU-    C-| G    CU         G     UU     UUUGUAUA 
                  CUGU  UG CCUG  UUGGCACUA CACAU  UUGCU        \
                  GACA  AC GGAU  AACCGUGAU GUGUA  AACGA        U
CCGAUCAACGUCUUAUAA    UA^ A    AU         -     UU     GUUUCAUA 
  120       110       100        90         80        70