MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-96-P2d

Family name MIR-96 (all species)
Seed UUGGCAA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-182-1
Paralogues Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xla-Mir-96-P2c  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3c-v2  Xla-Mir-96-P3d-v1  Xla-Mir-96-P3d-v2 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Aga-Mir-96-P2  Agr-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Ava-Mir-96-o2  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cja-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dlo-Mir-96-P2  Dma-Mir-96-P2-v1  Dma-Mir-96-P2-v2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2-v1  Dpu-Mir-96-P2-v2  Dsi-Mir-96-P2  Dya-Mir-96-P2  Eba-Mir-96-P2  Eca-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gpa-Mir-96-P2  Hme-Mir-96-P2  Hru-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Laf-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Lhy-Mir-96-P2  Llo-Mir-96-P2-v1  Llo-Mir-96-P2-v2  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmr-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Neu-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ofu-Mir-96-P2  Ovu-Mir-96-P2  Pab-Mir-96-P2  Pau-Mir-96-P2  Pbv-Mir-96-P2  Pca-Mir-96-P2  Pdu-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Pve-Mir-96-P2  Rno-Mir-96-P2  Rph-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Snu-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tur-Mir-96-P2  War-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030729.1: 63424667-63424731 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P2d)		 Mir-96-P2d NC_030729.1: 63424667-63424731 [-] UCSC Ensembl
Mir-96-P1d NC_030729.1: 63428529-63428592 [-] UCSC Ensembl
Mir-96-P3d-v1 NC_030729.1: 63429415-63429476 [-] UCSC Ensembl
Mir-96-P3d-v2 NC_030729.1: 63429416-63429475 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUCAGGAACAAUGACUUCUCUGGCAGUGUUUGGCAAUGGUAGAACUCACACUGGUGAGCUAUGUAGAUCCGGUGGUUCUAGACUUGCCAACUAUGGCCUGAGAAUAAAGCAACAUUUGCAUCG
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Structure
        10          20        30        40        50        60  
UCAUCAGGAACAAUGAC--|    U   A   U       UGG      U   ACUGGUGAGC 
                   UUCUC GGC GUG UUGGCAA   UAGAAC CAC          U
                   AAGAG CCG UAU AACCGUU   AUCUUG GUG          A
GCUACGUUUACAACGAAAU^    U   G   C       CAG      -   GCCUAGAUGU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-96-P2d_5p
mirBase accessionMIMAT0046490
Sequence 
0- UUUGGCAAUGGUAGAACUCACACU -24
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Star sequence

Xla-Mir-96-P2d_3p*
mirBase accessionMIMAT0046491
Sequence 
44- UGGUUCUAGACUUGCCAACUA -65
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