Mir-96-P2

MirGeneDB ID

Ami-Mir-96-P2

Family name

MIR-96 (all species)

Seed

UUGGCAA

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-182

Paralogues

Ami-Mir-96-P1 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bfl-Mir-96-P2f Bfl-Mir-96-P2g Bfl-Mir-96-P2h Bfl-Mir-96-P2i Bfl-Mir-96-P2j Bfl-Mir-96-P2k Bge-Mir-96-P2 Bla-Mir-96-P2f Bla-Mir-96-P2g Bla-Mir-96-P2h Bla-Mir-96-P2i Bla-Mir-96-P2j Bla-Mir-96-P2k Bta-Mir-96-P2 Cbr-Mir-96-P2p Cbr-Mir-96-P2q Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Csc-Mir-96-P2w Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dma-Mir-96-P2-v2 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dpu-Mir-96-P2-v2 Dre-Mir-96-P2a Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Ebu-Mir-96-P2e Eca-Mir-96-P2 Efe-Mir-96-P2n Efe-Mir-96-P2o Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gmo-Mir-96-P2a Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Llo-Mir-96-P2-v2 Loc-Mir-96-P2 Lpo-Mir-96-P2r Lpo-Mir-96-P2s-v1 Lpo-Mir-96-P2s-v2 Lpo-Mir-96-P2t-v1 Lpo-Mir-96-P2t-v2 Lpo-Mir-96-P2u Lpo-Mir-96-P2v-v1 Lpo-Mir-96-P2v-v2 Mal-Mir-96-P2a Mal-Mir-96-P2b Mdo-Mir-96-P2 Mgi-Mir-96-P2l Mgi-Mir-96-P2m Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mom-Mir-96-P2x Mom-Mir-96-P2y Mom-Mir-96-P2z Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pma-Mir-96-P2o1 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tni-Mir-96-P2a Tni-Mir-96-P2b Tur-Mir-96-P2 War-Mir-96-P2 Xla-Mir-96-P2c Xla-Mir-96-P2d Xtr-Mir-96-P2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017709854.1: 28203096-28203160 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-96-P2)

Mir-96-P3-v1 NW_017709854.1: 28193883-28193944 [+] UCSC
Mir-96-P3-v2 NW_017709854.1: 28193884-28193943 [+] UCSC
Mir-96-P1 NW_017709854.1: 28194128-28194191 [+] UCSC
Mir-96-P2 NW_017709854.1: 28203096-28203160 [+] UCSC

Precursor
(pre-Mir +30nt flank)

GCCUCACCGAGCCCGGUCCCUCUCGCUGUCUUUGGCAAUGGUAGAACUCACACUGGUGAGGUAUCAGGAUCCGGUGGUUCUAGACUUGCCAACUACCGCCCGAGGGCACAGCCGGCAUCGCCGCC

Get precursor sequence

Structure

        10          20        30        40        50        60  
GCCUCACCGAGCCCGGU--|    UC  U  CU       UGG      U   ACUGGUGAGG 
                   CCCUC  GC GU  UUGGCAA   UAGAAC CAC          U
                   GGGAG  CG CA  AACCGUU   AUCUUG GUG          A
CCGCCGCUACGGCCGACAC^    CC  C  UC       CAG      -   GCCUAGGACU 
   120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-96-P2_5p

mirBase accession

MIMAT0038194

Sequence

0- UUUGGCAAUGGUAGAACUCACACU -24

Get sequence

Star sequence

Ami-Mir-96-P2_3p*

mirBase accession

MIMAT0038195

Sequence

44- UGGUUCUAGACUUGCCAACUA -65

Get sequence