MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-96-P2o

Family name MIR-96 (all species)
Seed UUGGCAC
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-96-P1  Efe-Mir-96-P2n 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dma-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dsi-Mir-96-P2  Dya-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ovu-Mir-96-P2  Pbv-Mir-96-P2  Pfl-Mir-96-P2  Pma-Mir-96-P2o1  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)
Efet.01.217172: 1570-1639 [+]
Precursor
(pre-Mir +30nt flank)
AGCAGGCAACCGAUGGAAUACUCAACGGCUUUUGGCACUUAUAGAAUUCACUGAAUAUGCUCUGUGCUUCGAAUUGUCAGGAAUUCCUCAGUGCCUAGAGCCGUUAAAGUCACAAGACAACACUGUUAUC
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Structure
        10        20          30        40        50        60     
AGCAGGCAACCGAUGGAAUACUC--|        U      UAUA      A    AUAUGCUCUG 
                         AACGGCUUU GGCACU    GAAUUC CUGA          U
                         UUGCCGAGA CCGUGA    CUUAAG GACU          G
CUAUUGUCACAACAGAACACUGAAA^        U      CUC-      -    GUUAAGCUUC 
.       120       110       100        90          80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Efe-Mir-96-P2o_5p

mirBase accessionNone
Sequence
0- UUUGGCACUUAUAGAAUUCACUGA -24
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Star sequence

Efe-Mir-96-P2o_3p* (predicted)

mirBase accessionNone
Sequence
48- AGGAAUUCCUCAGUGCCUAGAG -70
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