Mir-96-P2o

MirGeneDB ID

Efe-Mir-96-P2o

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-96-P1 Efe-Mir-96-P2n

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dma-Mir-96-P2-v2 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dpu-Mir-96-P2-v2 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Llo-Mir-96-P2-v2 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pma-Mir-96-P2o1 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efet.01.217172: 1570-1639 [+]

Precursor
(pre-Mir +30nt flank)

AGCAGGCAACCGAUGGAAUACUCAACGGCUUUUGGCACUUAUAGAAUUCACUGAAUAUGCUCUGUGCUUCGAAUUGUCAGGAAUUCCUCAGUGCCUAGAGCCGUUAAAGUCACAAGACAACACUGUUAUC

Get precursor sequence

Structure

        10        20          30        40        50        60     
AGCAGGCAACCGAUGGAAUACUC--|        U      UAUA      A    AUAUGCUCUG 
                         AACGGCUUU GGCACU    GAAUUC CUGA          U
                         UUGCCGAGA CCGUGA    CUUAAG GACU          G
CUAUUGUCACAACAGAACACUGAAA^        U      CUC-      -    GUUAAGCUUC 
.       120       110       100        90          80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Efe-Mir-96-P2o_5p

mirBase accession

None

Sequence

0- UUUGGCACUUAUAGAAUUCACUGA -24

Get sequence

Star sequence

Efe-Mir-96-P2o_3p* (predicted)

mirBase accession

None

Sequence

48- AGGAAUUCCUCAGUGCCUAGAG -70

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