MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-96-P2

Family name MIR-96 (all species)
Seed UUGGCAA
Species Horse (Equus caballus)
MiRBase ID eca-mir-182
Paralogues Eca-Mir-96-P1  Eca-Mir-96-P3-v1  Eca-Mir-96-P3-v2 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Aga-Mir-96-P2  Agr-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Ava-Mir-96-o2  Bfl-Mir-96-P2f  Bfl-Mir-96-P2g  Bfl-Mir-96-P2h  Bfl-Mir-96-P2i  Bfl-Mir-96-P2j  Bfl-Mir-96-P2k  Bge-Mir-96-P2  Bla-Mir-96-P2f  Bla-Mir-96-P2g  Bla-Mir-96-P2h  Bla-Mir-96-P2i  Bla-Mir-96-P2j  Bla-Mir-96-P2k  Bta-Mir-96-P2  Cbr-Mir-96-P2p  Cbr-Mir-96-P2q  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cja-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Csc-Mir-96-P2w  Cte-Mir-96-P2  Dan-Mir-96-P2  Dlo-Mir-96-P2  Dma-Mir-96-P2-v1  Dma-Mir-96-P2-v2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2-v1  Dpu-Mir-96-P2-v2  Dre-Mir-96-P2a  Dsi-Mir-96-P2  Dya-Mir-96-P2  Eba-Mir-96-P2  Ebu-Mir-96-P2e  Efe-Mir-96-P2n  Efe-Mir-96-P2o  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gmo-Mir-96-P2a  Gpa-Mir-96-P2  Hme-Mir-96-P2  Hru-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Laf-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Lhy-Mir-96-P2  Llo-Mir-96-P2-v1  Llo-Mir-96-P2-v2  Loc-Mir-96-P2  Lpo-Mir-96-P2r  Lpo-Mir-96-P2s-v1  Lpo-Mir-96-P2s-v2  Lpo-Mir-96-P2t-v1  Lpo-Mir-96-P2t-v2  Lpo-Mir-96-P2u  Lpo-Mir-96-P2v-v1  Lpo-Mir-96-P2v-v2  Mal-Mir-96-P2a  Mal-Mir-96-P2b  Mdo-Mir-96-P2  Mgi-Mir-96-P2l  Mgi-Mir-96-P2m  Mml-Mir-96-P2  Mmr-Mir-96-P2  Mmu-Mir-96-P2  Mom-Mir-96-P2x  Mom-Mir-96-P2y  Mom-Mir-96-P2z  Mun-Mir-96-P2  Neu-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ofu-Mir-96-P2  Ovu-Mir-96-P2  Pab-Mir-96-P2  Pau-Mir-96-P2  Pbv-Mir-96-P2  Pca-Mir-96-P2  Pdu-Mir-96-P2  Pfl-Mir-96-P2  Pma-Mir-96-P2o1  Pmi-Mir-96-P2  Pve-Mir-96-P2  Rno-Mir-96-P2  Rph-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Snu-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tni-Mir-96-P2a  Tni-Mir-96-P2b  Tur-Mir-96-P2  War-Mir-96-P2  Xla-Mir-96-P2c  Xla-Mir-96-P2d  Xtr-Mir-96-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009151.1: 84571177-84571241 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P2)		 Mir-96-P2 CM009151.1: 84571177-84571241 [-] UCSC Ensembl
Mir-96-P1 CM009151.1: 84575669-84575732 [-] UCSC Ensembl
Mir-96-P3-v1 CM009151.1: 84575896-84575957 [-] UCSC Ensembl
Mir-96-P3-v2 CM009151.1: 84575897-84575956 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGGUCAGCUGCCACUUGCCUCCCACCAUUUUUGGCAAUGGUAGAACUCACACUGGUGAGGUAAUGGGAUCCGGUGGUUCUAGACUUGCCAACUAUGGUGCGAGGGCUCAGCAGGCAACUCCACC
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Structure
        10          20        30        40        50        60  
UGGGUCAGCUGCCACUUG--|   C      UU       UGG      U   ACUGGUGAGG 
                    CCUC CACCAU  UUGGCAA   UAGAAC CAC          U
                    GGAG GUGGUA  AACCGUU   AUCUUG GUG          A
CCACCUCAACGGACGACUCG^   C      UC       CAG      -   GCCUAGGGUA 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-96-P2_5p
mirBase accessionMIMAT0012937
Sequence 
0- UUUGGCAAUGGUAGAACUCACACU -24
Get sequence
Star sequence

Eca-Mir-96-P2_3p*
mirBase accessionNone
Sequence 
44- UGGUUCUAGACUUGCCAACUA -65
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